# HG changeset patch
# User earlhaminst
# Date 1511544759 18000
# Node ID 7e11a7f4bdbafcee9d0c52d08a1545944118076b
# Parent  19644996bc2af543af66fc24b69b321218d05e74
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit 77ed525b753e34d3e9dd4f07a239592ce764f7e6-dirty

diff -r 19644996bc2a -r 7e11a7f4bdba gstf_preparation.py
--- a/gstf_preparation.py	Fri Mar 17 07:58:27 2017 -0400
+++ b/gstf_preparation.py	Fri Nov 24 12:32:39 2017 -0500
@@ -220,6 +220,9 @@
     cur = conn.cursor()
 
     for gene in gene_dict.values():
+        if gene is None:
+            # This can happen when loading a JSON file from Ensembl
+            continue
         gene_id = gene['id']
         cur.execute('INSERT INTO gene (gene_id, gene_symbol, species, gene_json) VALUES (?, ?, ?, ?)',
                     (gene_id, gene.get('display_name', None), gene['species'], json.dumps(gene)))