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comparison hcluster_sg_parser.xml @ 0:dbc49bd1a3e9 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/hcluster_sg_parser commit 75c6b4d9bd23cdd5f8e5626b1b01f2abba32c274-dirty
author earlhaminst
date Mon, 12 Dec 2016 07:12:23 -0500
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children 17aa68582a05
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-1:000000000000 0:dbc49bd1a3e9
1 <tool id="hcluster_sg_parser" name="hcluster_sg_parser" version="0.1.1">
2 <description>Converts hcluster_sg 3-column output into lists of ids</description>
3 <command>
4 <![CDATA[
5 perl $__tool_directory__/hcluster_sg_parser.pl
6 $inputFile
7 ]]>
8 </command>
9 <inputs>
10 <param name="inputFile" type="data" format="tabular" label="hcluster output file in 3-column format" help="3-columns format: cluster_id cluster-size cluster-members" />
11 </inputs>
12 <outputs>
13 <collection name="ids_lists" type="list" label="${tool.name} on ${on_string}">
14 <discover_datasets pattern="(?P&lt;designation&gt;.+)_output\.txt" ext="txt" />
15 </collection>
16 </outputs>
17 <tests>
18 <test>
19 <param name="inputFile" ftype="tabular" value="hcluster_sg.tabular" />
20 <output_collection name="ids_lists" type="list">
21 <element name="0" file="0_output.txt" ftype="txt" />
22 <element name="1" file="1_output.txt" ftype="txt" />
23 <element name="2" file="2_output.txt" ftype="txt" />
24 <element name="3" file="3_output.txt" ftype="txt" />
25 </output_collection>
26 </test>
27 </tests>
28 <help>
29 <![CDATA[
30 Simple wrapper for hcluster_sg output parser.
31 ]]>
32 </help>
33 <citations>
34 </citations>
35 </tool>