Mercurial > repos > earlhaminst > lotus2

comparison lotus2.xml @ 18:6c22795e1be0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/lotus2 commit afdb7dbe3283ee64d3aa2277efe505c7341575d8
author earlhaminst
date Fri, 18 Nov 2022 08:55:22 +0000
parents 28f284a679ce
children a3d31a68f291
comparison
equal deleted inserted replaced
17:28f284a679ce 18:6c22795e1be0
1 <tool id="lotus2" name="LotuS2" version="@VERSION@" profile="20.09"> 1 <tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy1" profile="20.09">
2 <description>fast OTU processing pipeline</description> 2 <description>fast OTU processing pipeline</description>
3 <macros> 3 <macros>
4 <token name="@VERSION@">2.21</token> 4 <token name="@VERSION@">2.21</token>
5 <xml name="refDB_macro" token_ref_fasta_formats="fasta,fasta.gz"> 5 <xml name="refDB_macro" token_ref_fasta_formats="fasta,fasta.gz">
6 <conditional name="refDB_cond"> 6 <conditional name="refDB_cond">
81 #if not $map: 81 #if not $map:
82 cat '$generated_mapping' && 82 cat '$generated_mapping' &&
83 #set map = $generated_mapping 83 #set map = $generated_mapping
84 #end if 84 #end if
85 85
86 set +e &&
87
86 lotus2 88 lotus2
87 -i input/ 89 -i input/
88 -o output 90 -o output
89 -tmpDir tmp_folder 91 -tmpDir tmp_folder
90 -threads "\${GALAXY_SLOTS:-1}" 92 -threads "\${GALAXY_SLOTS:-1}"