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comparison lotus2.xml @ 3:77cb867e9608 draft

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"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/lotus2 commit ba755f943aaa8b37434744d32ea0c524503bf50f"
author earlhaminst
date Wed, 26 May 2021 11:54:37 +0000
parents cf56a6553385
children 59b8864c9fa0
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2:cf56a6553385 3:77cb867e9608
1 <tool id="lotus2" name="LotuS2" version="@VERSION@" profile="20.01"> 1 <tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy1" profile="20.01">
2 <description>fast OTU processing pipeline</description> 2 <description>fast OTU processing pipeline</description>
3 <macros> 3 <macros>
4 <token name="@VERSION@">2.06</token> 4 <token name="@VERSION@">2.06</token>
5 <xml name="refDB_macro"> 5 <xml name="refDB_macro">
6 <param argument="-refDB" type="select" label="Reference Database"> 6 <param argument="-refDB" type="select" label="Reference Database">
255 </section> 255 </section>
256 </inputs> 256 </inputs>
257 257
258 <outputs> 258 <outputs>
259 <data name="otu" format="tabular" label="${tool.name} on ${on_string}: OTU abundance matrix" from_work_dir="output/OTU.txt" /> 259 <data name="otu" format="tabular" label="${tool.name} on ${on_string}: OTU abundance matrix" from_work_dir="output/OTU.txt" />
260 <data name="otu_biom" format="biom" label="${tool.name} on ${on_string}: biom-formatted OTU abundance matrix" from_work_dir="output/OTU.biom" /> 260 <data name="otu_biom" format="biom1" label="${tool.name} on ${on_string}: biom-formatted OTU abundance matrix" from_work_dir="output/OTU.biom" />
261 <data name="otu_fna" format="fasta" label="${tool.name} on ${on_string}: FASTA-formatted extended OTU seed sequences" from_work_dir="output/OTU.fna" /> 261 <data name="otu_fna" format="fasta" label="${tool.name} on ${on_string}: FASTA-formatted extended OTU seed sequences" from_work_dir="output/OTU.fna" />
262 <data name="OTUphylo_nwk" format="newick" label="${tool.name} on ${on_string}: Newick-formatted phylogenetic tree between sequences" from_work_dir="output/OTUphylo.nwk" /> 262 <data name="OTUphylo_nwk" format="newick" label="${tool.name} on ${on_string}: Newick-formatted phylogenetic tree between sequences" from_work_dir="output/OTUphylo.nwk" />
263 <data name="mapping" format="tabular" label="${tool.name} on ${on_string}: mapping file" from_work_dir="output/primary/in.map" /> 263 <data name="mapping" format="tabular" label="${tool.name} on ${on_string}: mapping file" from_work_dir="output/primary/in.map" />
264 <data name="outputs" format="tar" label="${tool.name} on ${on_string}: All output files" from_work_dir="output.tar.gz" /> 264 <data name="outputs" format="tar" label="${tool.name} on ${on_string}: All output files" from_work_dir="output.tar.gz" />
265 </outputs> 265 </outputs>