# HG changeset patch
# User earlhaminst
# Date 1669031355 0
# Node ID a3d31a68f291b70bd59cec5d5ff954285274620f
# Parent  6c22795e1be093b26e940ef538158c8a890c59f0
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/lotus2 commit 3d69a14f20c8088412cf3729814be721b0db778c

diff -r 6c22795e1be0 -r a3d31a68f291 lotus2.xml
--- a/lotus2.xml	Fri Nov 18 08:55:22 2022 +0000
+++ b/lotus2.xml	Mon Nov 21 11:49:15 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy1" profile="20.09">
+<tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy2" profile="20.09">
     <description>fast OTU processing pipeline</description>
     <macros>
         <token name="@VERSION@">2.21</token>
@@ -305,7 +305,7 @@
             <param argument="-keepUnclassified" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Keep unclassified OTUs" help="Includes unclassified OTUs (i.e. no match in RDP/Blast database) in OTU and taxa abundance matrix calculations" />
             <param argument="-LCA_cover" type="float" min="0" max="1" value="" optional="true" label="Minimum horizontal coverage of an OTU sequence against ref DB (optional)"/>
             <param argument="-LCA_frac" type="float" min="0" max="1" value="" optional="true" label="Minimum fraction of reads with identical taxonomy (optional)"/>
-            <param argument="-lulu" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Use LULU to merge OTUs based on their occurrence" />
+            <param argument="-lulu" type="boolean" truevalue="1" falsevalue="0" checked="false" label="Use LULU to merge OTUs based on their occurrence" />
             <param argument="-buildPhylo" type="select" label="Build OTU phylogeny">
                 <option value="0">Disable</option>
                 <option value="1" selected="true">Use fasttree2</option>
diff -r 6c22795e1be0 -r a3d31a68f291 test-data/Arabidopsis_R1.fastqsanger.gz
Binary file test-data/Arabidopsis_R1.fastqsanger.gz has changed
diff -r 6c22795e1be0 -r a3d31a68f291 test-data/Arabidopsis_R2.fastqsanger.gz
Binary file test-data/Arabidopsis_R2.fastqsanger.gz has changed