Mercurial > repos > earlhaminst > miranda

changeset 1:89d595ffa9db draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2
author earlhaminst
date Fri, 24 Mar 2017 12:47:52 -0400
parents 05bc31ccc323
children 9c8ff1bdd041
files miranda.xml tool_dependencies.xml
diffstat 2 files changed, 1 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/miranda.xml	Fri Nov 11 07:03:25 2016 -0500
+++ b/miranda.xml	Fri Mar 24 12:47:52 2017 -0400
@@ -4,7 +4,7 @@
         <requirement type="package" version="3.3a">miranda</requirement>
     </requirements>
     <version_command>miranda --version|grep 'miranda v'</version_command>
-    <command>
+    <command detect_errors="exit_code">
 <![CDATA[
 miranda '$microrna' '$query'
 #if str($sc)
--- a/tool_dependencies.xml	Fri Nov 11 07:03:25 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,17 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="miranda" version="3.3a">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url" target_filename="miRanda-3.3a.tar.gz" sha256sum="a671da562cf4636ef5085b27349df2df2f335774663fd423deb08f31212ec778">http://cbio.mskcc.org/microrna_data/miRanda-aug2010.tar.gz</action>
-                <action type="autoconf" />
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-miRanda finds potential target sites for miRNAs in genomic sequences.
-        </readme>
-    </package>
-</tool_dependency>