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comparison smart_domains.xml @ 1:8c24cc7431aa draft default tip

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"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/smart_domains commit 411fa9c106996050b2d2e8027e14d2068f6b14c3"
author earlhaminst
date Tue, 22 Dec 2020 04:29:12 +0000
parents a3b26189fee3
children
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0:a3b26189fee3 1:8c24cc7431aa
40 <param name="Repeats" value="false" /> 40 <param name="Repeats" value="false" />
41 <param name="DISEMBL" value="false" /> 41 <param name="DISEMBL" value="false" />
42 <param name="Schnipsel" value="false" /> 42 <param name="Schnipsel" value="false" />
43 <param name="outputFormat" value="--outputFormat=txt" /> 43 <param name="outputFormat" value="--outputFormat=txt" />
44 <output_collection name="output_lists" type="list" count="12"> 44 <output_collection name="output_lists" type="list" count="12">
45 <element name="ENSCAFP00000021307" file="ENSCAFP00000021307_SMART_results.txt" ftype="txt" /> 45 <element name="ENSCAFP00000021307" file="ENSCAFP00000021307_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
46 <element name="ENSCAFP00000021330" file="ENSCAFP00000021330_SMART_results.txt" ftype="txt" /> 46 <element name="ENSCAFP00000021330" file="ENSCAFP00000021330_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
47 <element name="ENSMUSP00000026013" file="ENSMUSP00000026013_SMART_results.txt" ftype="txt" /> 47 <element name="ENSMUSP00000026013" file="ENSMUSP00000026013_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
48 <element name="ENSMUSP00000040550" file="ENSMUSP00000040550_SMART_results.txt" ftype="txt" /> 48 <element name="ENSMUSP00000040550" file="ENSMUSP00000040550_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
49 <element name="ENSP00000340684" file="ENSP00000340684_SMART_results.txt" ftype="txt" /> 49 <element name="ENSP00000340684" file="ENSP00000340684_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
50 <element name="ENSP00000367309" file="ENSP00000367309_SMART_results.txt" ftype="txt" /> 50 <element name="ENSP00000367309" file="ENSP00000367309_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
51 <element name="ENSPTRP00000037440" file="ENSPTRP00000037440_SMART_results.txt" ftype="txt" /> 51 <element name="ENSPTRP00000037440" file="ENSPTRP00000037440_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
52 <element name="ENSPTRP00000037441" file="ENSPTRP00000037441_SMART_results.txt" ftype="txt" /> 52 <element name="ENSPTRP00000037441" file="ENSPTRP00000037441_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
53 <element name="ENSRNOP00000043466" file="ENSRNOP00000043466_SMART_results.txt" ftype="txt" /> 53 <element name="ENSRNOP00000043466" file="ENSRNOP00000043466_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
54 <element name="ENSRNOP00000063784" file="ENSRNOP00000063784_SMART_results.txt" ftype="txt" /> 54 <element name="ENSRNOP00000063784" file="ENSRNOP00000063784_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
55 <element name="ENSSSCP00000013044" file="ENSSSCP00000013044_SMART_results.txt" ftype="txt" /> 55 <element name="ENSSSCP00000013044" file="ENSSSCP00000013044_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
56 <element name="ENSSSCP00000028353" file="ENSSSCP00000028353_SMART_results.txt" ftype="txt" /> 56 <element name="ENSSSCP00000028353" file="ENSSSCP00000028353_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
57 </output_collection> 57 </output_collection>
58 </test> 58 </test>
59 <test> 59 <test>
60 <param name="inputFile" ftype="fasta" value="seq.fa" /> 60 <param name="inputFile" ftype="fasta" value="seq.fa" />
61 <param name="Pfam" value="true" /> 61 <param name="Pfam" value="true" />
63 <param name="Repeats" value="false" /> 63 <param name="Repeats" value="false" />
64 <param name="DISEMBL" value="false" /> 64 <param name="DISEMBL" value="false" />
65 <param name="Schnipsel" value="false" /> 65 <param name="Schnipsel" value="false" />
66 <param name="outputFormat" value="--outputFormat=json" /> 66 <param name="outputFormat" value="--outputFormat=json" />
67 <output_collection name="output_lists" type="list" count="12"> 67 <output_collection name="output_lists" type="list" count="12">
68 <element name="ENSCAFP00000021307" file="ENSCAFP00000021307_SMART_results.json" ftype="json" compare="sim_size" /> 68 <element name="ENSCAFP00000021307" file="ENSCAFP00000021307_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
69 <element name="ENSCAFP00000021330" file="ENSCAFP00000021330_SMART_results.json" ftype="json" compare="sim_size" /> 69 <element name="ENSCAFP00000021330" file="ENSCAFP00000021330_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
70 <element name="ENSMUSP00000026013" file="ENSMUSP00000026013_SMART_results.json" ftype="json" compare="sim_size" /> 70 <element name="ENSMUSP00000026013" file="ENSMUSP00000026013_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
71 <element name="ENSMUSP00000040550" file="ENSMUSP00000040550_SMART_results.json" ftype="json" compare="sim_size" /> 71 <element name="ENSMUSP00000040550" file="ENSMUSP00000040550_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
72 <element name="ENSP00000340684" file="ENSP00000340684_SMART_results.json" ftype="json" compare="sim_size" /> 72 <element name="ENSP00000340684" file="ENSP00000340684_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
73 <element name="ENSP00000367309" file="ENSP00000367309_SMART_results.json" ftype="json" compare="sim_size" /> 73 <element name="ENSP00000367309" file="ENSP00000367309_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
74 <element name="ENSPTRP00000037440" file="ENSPTRP00000037440_SMART_results.json" ftype="json" compare="sim_size" /> 74 <element name="ENSPTRP00000037440" file="ENSPTRP00000037440_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
75 <element name="ENSPTRP00000037441" file="ENSPTRP00000037441_SMART_results.json" ftype="json" compare="sim_size" /> 75 <element name="ENSPTRP00000037441" file="ENSPTRP00000037441_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
76 <element name="ENSRNOP00000043466" file="ENSRNOP00000043466_SMART_results.json" ftype="json" compare="sim_size" /> 76 <element name="ENSRNOP00000043466" file="ENSRNOP00000043466_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
77 <element name="ENSRNOP00000063784" file="ENSRNOP00000063784_SMART_results.json" ftype="json" compare="sim_size" /> 77 <element name="ENSRNOP00000063784" file="ENSRNOP00000063784_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
78 <element name="ENSSSCP00000013044" file="ENSSSCP00000013044_SMART_results.json" ftype="json" compare="sim_size" /> 78 <element name="ENSSSCP00000013044" file="ENSSSCP00000013044_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
79 <element name="ENSSSCP00000028353" file="ENSSSCP00000028353_SMART_results.json" ftype="json" compare="sim_size" /> 79 <element name="ENSSSCP00000028353" file="ENSSSCP00000028353_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
80 </output_collection> 80 </output_collection>
81 </test> 81 </test>
82 </tests> 82 </tests>
83 <help><![CDATA[ 83 <help><![CDATA[
84 A simple tool to search domains in multiple protein sequences contained in a FASTA file using the `SMART`_ web service. 84 A simple tool to search domains in multiple protein sequences contained in a FASTA file using the `SMART`_ web service.