# HG changeset patch # User earlhaminst # Date 1608611352 0 # Node ID 8c24cc7431aa5959ad6af9c26aae5ae2e60a74c5 # Parent a3b26189fee347c30e82042ed117e5afc4e351f4 "planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/smart_domains commit 411fa9c106996050b2d2e8027e14d2068f6b14c3" diff -r a3b26189fee3 -r 8c24cc7431aa smart_domains.xml --- a/smart_domains.xml Thu Jun 15 07:52:09 2017 -0400 +++ b/smart_domains.xml Tue Dec 22 04:29:12 2020 +0000 @@ -42,18 +42,18 @@ - - - - - - - - - - - - + + + + + + + + + + + + @@ -65,18 +65,18 @@ - - - - - - - - - - - - + + + + + + + + + + + + diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSCAFP00000021307_SMART_results.json --- a/test-data/ENSCAFP00000021307_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSCAFP00000021307_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"START":"13","END":"62","STATUS":"visible|OK","DOMAIN":"Pfam:FAD_binding_3","EVALUE":"5.7e-07","TYPE":"PFAM"},{"TYPE":"PFAM","EVALUE":"3.7e-06","END":"58","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:Pyr_redox"},{"EVALUE":"2e-09","TYPE":"PFAM","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"159","START":"15"},{"END":"55","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM","EVALUE":"2.7e-07"},{"START":"16","END":"33","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"EVALUE":"5.8e-16","TYPE":"PFAM","START":"18","END":"84","STATUS":"visible|OK","DOMAIN":"Pfam:NAD_binding_8"},{"TYPE":"PFAM","EVALUE":"4.8e-76","DOMAIN":"Pfam:Amino_oxidase","START":"23","STATUS":"visible|OK","END":"460"},{"END":"71","STATUS":"hidden|overlap","START":"60","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0"},{"START":"497","END":"519","STATUS":"visible|OK","DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","EVALUE":"0"}] \ No newline at end of file +[{"END":"62","STATUS":"visible|OK","START":"13","EVALUE":"1.4e-06","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3"},{"EVALUE":"3.1e-09","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO","TYPE":"PFAM","END":"160"},{"END":"55","STATUS":"visible|OK","EVALUE":"6.1e-07","START":"15","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM"},{"DOMAIN":"Pfam:Pyr_redox","TYPE":"PFAM","STATUS":"visible|OK","EVALUE":"6.5e-06","START":"15","END":"58"},{"STATUS":"hidden|overlap","EVALUE":"0","START":"16","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","END":"33"},{"END":"84","START":"18","STATUS":"visible|OK","EVALUE":"2.2e-15","DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM"},{"END":"460","STATUS":"visible|OK","EVALUE":"3.6e-75","START":"23","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase"},{"END":"71","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","EVALUE":"0","STATUS":"hidden|overlap","START":"60"},{"END":"519","DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","START":"497","STATUS":"visible|OK","EVALUE":"0"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSCAFP00000021307_SMART_results.txt --- a/test-data/ENSCAFP00000021307_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSCAFP00000021307_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -6,28 +6,28 @@ DOMAIN=Pfam:FAD_binding_3 START=13 END=62 -EVALUE=5.7e-07 +EVALUE=1.4e-06 +TYPE=PFAM +STATUS=visible|OK + +DOMAIN=Pfam:DAO +START=15 +END=160 +EVALUE=3.1e-09 +TYPE=PFAM +STATUS=visible|OK + +DOMAIN=Pfam:FAD_binding_2 +START=15 +END=55 +EVALUE=6.1e-07 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Pyr_redox START=15 END=58 -EVALUE=3.7e-06 -TYPE=PFAM -STATUS=visible|OK - -DOMAIN=Pfam:DAO -START=15 -END=159 -EVALUE=2e-09 -TYPE=PFAM -STATUS=visible|OK - -DOMAIN=Pfam:FAD_binding_2 -START=15 -END=55 -EVALUE=2.7e-07 +EVALUE=6.5e-06 TYPE=PFAM STATUS=visible|OK @@ -41,14 +41,14 @@ DOMAIN=Pfam:NAD_binding_8 START=18 END=84 -EVALUE=5.8e-16 +EVALUE=2.2e-15 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=23 END=460 -EVALUE=4.8e-76 +EVALUE=3.6e-75 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSCAFP00000021330_SMART_results.json --- a/test-data/ENSCAFP00000021330_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSCAFP00000021330_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"START":"9","STATUS":"visible|OK","END":"75","DOMAIN":"Pfam:NAD_binding_8","EVALUE":"7.9e-15","TYPE":"PFAM"},{"EVALUE":"2.4e-79","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","START":"14","STATUS":"visible|OK","END":"451"},{"EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","START":"437","STATUS":"hidden|overlap","END":"449"},{"START":"490","END":"512","STATUS":"visible|OK","DOMAIN":"transmembrane_domain","EVALUE":"0","TYPE":"INTRINSIC"}] \ No newline at end of file +[{"END":"75","START":"9","STATUS":"visible|OK","EVALUE":"3.5e-14","DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM"},{"DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM","STATUS":"visible|OK","EVALUE":"2e-78","START":"14","END":"451"},{"END":"449","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"hidden|overlap","START":"437"},{"TYPE":"INTRINSIC","DOMAIN":"transmembrane_domain","EVALUE":"0","STATUS":"visible|OK","START":"490","END":"512"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSCAFP00000021330_SMART_results.txt --- a/test-data/ENSCAFP00000021330_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSCAFP00000021330_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -6,14 +6,14 @@ DOMAIN=Pfam:NAD_binding_8 START=9 END=75 -EVALUE=7.9e-15 +EVALUE=3.5e-14 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=14 END=451 -EVALUE=2.4e-79 +EVALUE=2e-78 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSMUSP00000026013_SMART_results.json --- a/test-data/ENSMUSP00000026013_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSMUSP00000026013_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"END":"168","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO","TYPE":"PFAM","EVALUE":"1.5e-08"},{"END":"55","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM","EVALUE":"4.4e-06"},{"END":"84","STATUS":"visible|OK","START":"18","DOMAIN":"Pfam:NAD_binding_8","EVALUE":"5.3e-16","TYPE":"PFAM"},{"START":"23","END":"460","STATUS":"visible|OK","DOMAIN":"Pfam:Amino_oxidase","EVALUE":"5.4e-73","TYPE":"PFAM"},{"END":"459","STATUS":"hidden|overlap","START":"446","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0"}] \ No newline at end of file +[{"END":"55","STATUS":"visible|OK","EVALUE":"9.8e-06","START":"15","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM"},{"START":"15","STATUS":"visible|OK","EVALUE":"2.5e-08","TYPE":"PFAM","DOMAIN":"Pfam:DAO","END":"161"},{"DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM","EVALUE":"2e-15","STATUS":"visible|OK","START":"18","END":"84"},{"END":"460","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","START":"23","EVALUE":"6.8e-72"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","STATUS":"hidden|overlap","START":"446","EVALUE":"0","END":"459"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSMUSP00000026013_SMART_results.txt --- a/test-data/ENSMUSP00000026013_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSMUSP00000026013_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -3,31 +3,31 @@ CRC_PASSED=1 NUMBER_OF_FEATURES_FOUND=5 -DOMAIN=Pfam:DAO +DOMAIN=Pfam:FAD_binding_2 START=15 -END=168 -EVALUE=1.5e-08 +END=55 +EVALUE=9.8e-06 TYPE=PFAM STATUS=visible|OK -DOMAIN=Pfam:FAD_binding_2 +DOMAIN=Pfam:DAO START=15 -END=55 -EVALUE=4.4e-06 +END=161 +EVALUE=2.5e-08 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:NAD_binding_8 START=18 END=84 -EVALUE=5.3e-16 +EVALUE=2e-15 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=23 END=460 -EVALUE=5.4e-73 +EVALUE=6.8e-72 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSMUSP00000040550_SMART_results.json --- a/test-data/ENSMUSP00000040550_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSMUSP00000040550_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"EVALUE":"7.9e-08","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","START":"6","STATUS":"visible|OK","END":"45"},{"TYPE":"INTRINSIC","EVALUE":"0","END":"14","STATUS":"hidden|overlap","START":"7","DOMAIN":"low_complexity_region"},{"EVALUE":"4.1e-16","TYPE":"PFAM","START":"9","END":"75","STATUS":"visible|OK","DOMAIN":"Pfam:NAD_binding_8"},{"EVALUE":"7.6e-75","TYPE":"PFAM","START":"14","END":"451","STATUS":"visible|OK","DOMAIN":"Pfam:Amino_oxidase"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"449","START":"437"}] \ No newline at end of file +[{"START":"6","STATUS":"visible|OK","EVALUE":"1.8e-07","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","END":"45"},{"START":"7","STATUS":"hidden|overlap","EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","END":"14"},{"TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","START":"9","STATUS":"visible|OK","EVALUE":"1.3e-15","END":"75"},{"END":"451","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","START":"14","STATUS":"visible|OK","EVALUE":"5.4e-74"},{"END":"449","START":"437","STATUS":"hidden|overlap","EVALUE":"0","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSMUSP00000040550_SMART_results.txt --- a/test-data/ENSMUSP00000040550_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSMUSP00000040550_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -6,7 +6,7 @@ DOMAIN=Pfam:FAD_binding_2 START=6 END=45 -EVALUE=7.9e-08 +EVALUE=1.8e-07 TYPE=PFAM STATUS=visible|OK @@ -20,14 +20,14 @@ DOMAIN=Pfam:NAD_binding_8 START=9 END=75 -EVALUE=4.1e-16 +EVALUE=1.3e-15 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=14 END=451 -EVALUE=7.6e-75 +EVALUE=5.4e-74 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSP00000340684_SMART_results.json --- a/test-data/ENSP00000340684_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSP00000340684_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"EVALUE":"5.7e-09","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","STATUS":"visible|OK","END":"64","START":"13"},{"EVALUE":"5.5e-07","TYPE":"PFAM","END":"61","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:Pyr_redox"},{"END":"108","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO","EVALUE":"4.6e-09","TYPE":"PFAM"},{"EVALUE":"7.2e-07","TYPE":"PFAM","END":"55","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:FAD_binding_2"},{"DOMAIN":"low_complexity_region","START":"16","STATUS":"hidden|overlap","END":"23","EVALUE":"0","TYPE":"INTRINSIC"},{"DOMAIN":"Pfam:NAD_binding_8","START":"18","STATUS":"visible|OK","END":"84","TYPE":"PFAM","EVALUE":"4.4e-16"},{"EVALUE":"3.5e-76","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","START":"23","STATUS":"visible|OK","END":"460"},{"END":"71","STATUS":"hidden|overlap","START":"60","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"459","START":"446","EVALUE":"0","TYPE":"INTRINSIC"}] \ No newline at end of file +[{"TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","STATUS":"visible|OK","START":"13","EVALUE":"1.4e-08","END":"64"},{"END":"55","START":"15","STATUS":"visible|OK","EVALUE":"1.6e-06","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM"},{"EVALUE":"9.6e-09","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO","TYPE":"PFAM","END":"110"},{"TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox","STATUS":"visible|OK","EVALUE":"9.6e-07","START":"15","END":"61"},{"END":"23","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"hidden|overlap","START":"16"},{"START":"18","STATUS":"visible|OK","EVALUE":"2e-15","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","END":"84"},{"END":"460","STATUS":"visible|OK","EVALUE":"2.3e-75","START":"23","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"hidden|overlap","START":"60","END":"71"},{"STATUS":"hidden|overlap","START":"446","EVALUE":"0","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","END":"459"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSP00000340684_SMART_results.txt --- a/test-data/ENSP00000340684_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSP00000340684_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -6,28 +6,28 @@ DOMAIN=Pfam:FAD_binding_3 START=13 END=64 -EVALUE=5.7e-09 +EVALUE=1.4e-08 +TYPE=PFAM +STATUS=visible|OK + +DOMAIN=Pfam:FAD_binding_2 +START=15 +END=55 +EVALUE=1.6e-06 +TYPE=PFAM +STATUS=visible|OK + +DOMAIN=Pfam:DAO +START=15 +END=110 +EVALUE=9.6e-09 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Pyr_redox START=15 END=61 -EVALUE=5.5e-07 -TYPE=PFAM -STATUS=visible|OK - -DOMAIN=Pfam:DAO -START=15 -END=108 -EVALUE=4.6e-09 -TYPE=PFAM -STATUS=visible|OK - -DOMAIN=Pfam:FAD_binding_2 -START=15 -END=55 -EVALUE=7.2e-07 +EVALUE=9.6e-07 TYPE=PFAM STATUS=visible|OK @@ -41,14 +41,14 @@ DOMAIN=Pfam:NAD_binding_8 START=18 END=84 -EVALUE=4.4e-16 +EVALUE=2e-15 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=23 END=460 -EVALUE=3.5e-76 +EVALUE=2.3e-75 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSP00000367309_SMART_results.json --- a/test-data/ENSP00000367309_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSP00000367309_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"EVALUE":"2.6e-07","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","START":"4","STATUS":"visible|OK","END":"51"},{"DOMAIN":"Pfam:Pyr_redox","STATUS":"visible|OK","END":"51","START":"6","EVALUE":"4.5e-06","TYPE":"PFAM"},{"DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"211","START":"6","TYPE":"PFAM","EVALUE":"2.7e-08"},{"DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","END":"45","START":"6","TYPE":"PFAM","EVALUE":"1.3e-07"},{"TYPE":"PFAM","EVALUE":"6.4e-16","END":"75","STATUS":"visible|OK","START":"9","DOMAIN":"Pfam:NAD_binding_8"},{"END":"451","STATUS":"visible|OK","START":"14","DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM","EVALUE":"5.6e-75"},{"START":"437","END":"449","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"transmembrane_domain","START":"490","STATUS":"visible|OK","END":"512"}] \ No newline at end of file +[{"EVALUE":"6.3e-07","STATUS":"visible|OK","START":"4","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","END":"51"},{"TYPE":"PFAM","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","EVALUE":"4.1e-08","START":"6","END":"199"},{"END":"45","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","START":"6","EVALUE":"2.8e-07"},{"END":"75","DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM","STATUS":"visible|OK","START":"9","EVALUE":"2.1e-15"},{"END":"451","STATUS":"visible|OK","START":"14","EVALUE":"3.1e-74","DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"hidden|overlap","START":"437","END":"449"},{"DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","STATUS":"visible|OK","EVALUE":"0","START":"490","END":"512"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSP00000367309_SMART_results.txt --- a/test-data/ENSP00000367309_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSP00000367309_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -1,47 +1,40 @@ -- SMART RESULT TEXTFORMAT -- CRC_PASSED=1 -NUMBER_OF_FEATURES_FOUND=8 +NUMBER_OF_FEATURES_FOUND=7 DOMAIN=Pfam:FAD_binding_3 START=4 END=51 -EVALUE=2.6e-07 -TYPE=PFAM -STATUS=visible|OK - -DOMAIN=Pfam:Pyr_redox -START=6 -END=51 -EVALUE=4.5e-06 +EVALUE=6.3e-07 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:DAO START=6 -END=211 -EVALUE=2.7e-08 +END=199 +EVALUE=4.1e-08 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:FAD_binding_2 START=6 END=45 -EVALUE=1.3e-07 +EVALUE=2.8e-07 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:NAD_binding_8 START=9 END=75 -EVALUE=6.4e-16 +EVALUE=2.1e-15 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=14 END=451 -EVALUE=5.6e-75 +EVALUE=3.1e-74 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSPTRP00000037440_SMART_results.json --- a/test-data/ENSPTRP00000037440_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSPTRP00000037440_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"END":"64","STATUS":"visible|OK","START":"13","DOMAIN":"Pfam:FAD_binding_3","TYPE":"PFAM","EVALUE":"1.5e-09"},{"TYPE":"PFAM","EVALUE":"1.2e-07","END":"61","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:Pyr_redox"},{"EVALUE":"1.3e-09","TYPE":"PFAM","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"130","START":"15"},{"DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","END":"55","START":"15","EVALUE":"1.9e-07","TYPE":"PFAM"},{"TYPE":"INTRINSIC","EVALUE":"0","END":"23","STATUS":"hidden|overlap","START":"16","DOMAIN":"low_complexity_region"},{"EVALUE":"1.2e-16","TYPE":"PFAM","START":"18","END":"84","STATUS":"visible|OK","DOMAIN":"Pfam:NAD_binding_8"},{"DOMAIN":"Pfam:Amino_oxidase","START":"23","STATUS":"visible|OK","END":"460","EVALUE":"2.6e-76","TYPE":"PFAM"},{"TYPE":"INTRINSIC","EVALUE":"0","START":"60","END":"71","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region"},{"EVALUE":"0","TYPE":"INTRINSIC","START":"446","END":"459","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region"}] \ No newline at end of file +[{"END":"64","STATUS":"visible|OK","START":"13","EVALUE":"3.2e-08","DOMAIN":"Pfam:FAD_binding_3","TYPE":"PFAM"},{"END":"55","EVALUE":"2.5e-06","STATUS":"visible|OK","START":"15","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2"},{"END":"61","STATUS":"visible|OK","EVALUE":"1.7e-06","START":"15","TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox"},{"TYPE":"PFAM","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","START":"15","EVALUE":"1.3e-08","END":"152"},{"END":"23","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","STATUS":"hidden|overlap","EVALUE":"0","START":"16"},{"TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","STATUS":"visible|OK","START":"18","EVALUE":"4.2e-15","END":"84"},{"END":"460","START":"23","STATUS":"visible|OK","EVALUE":"5.8e-75","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase"},{"END":"71","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","START":"60","STATUS":"hidden|overlap","EVALUE":"0"},{"START":"446","STATUS":"hidden|overlap","EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","END":"459"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSPTRP00000037440_SMART_results.txt --- a/test-data/ENSPTRP00000037440_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSPTRP00000037440_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -6,28 +6,28 @@ DOMAIN=Pfam:FAD_binding_3 START=13 END=64 -EVALUE=1.5e-09 +EVALUE=3.2e-08 +TYPE=PFAM +STATUS=visible|OK + +DOMAIN=Pfam:FAD_binding_2 +START=15 +END=55 +EVALUE=2.5e-06 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Pyr_redox START=15 END=61 -EVALUE=1.2e-07 +EVALUE=1.7e-06 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:DAO START=15 -END=130 -EVALUE=1.3e-09 -TYPE=PFAM -STATUS=visible|OK - -DOMAIN=Pfam:FAD_binding_2 -START=15 -END=55 -EVALUE=1.9e-07 +END=152 +EVALUE=1.3e-08 TYPE=PFAM STATUS=visible|OK @@ -41,14 +41,14 @@ DOMAIN=Pfam:NAD_binding_8 START=18 END=84 -EVALUE=1.2e-16 +EVALUE=4.2e-15 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=23 END=460 -EVALUE=2.6e-76 +EVALUE=5.8e-75 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSPTRP00000037441_SMART_results.json --- a/test-data/ENSPTRP00000037441_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSPTRP00000037441_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"TYPE":"PFAM","EVALUE":"8.8e-08","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"211","START":"6"},{"DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","END":"45","START":"6","EVALUE":"1.2e-06","TYPE":"PFAM"},{"END":"75","STATUS":"visible|OK","START":"9","DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM","EVALUE":"5.2e-15"},{"DOMAIN":"Pfam:Amino_oxidase","START":"14","STATUS":"visible|OK","END":"451","EVALUE":"7.1e-74","TYPE":"PFAM"},{"EVALUE":"0","TYPE":"INTRINSIC","START":"437","END":"449","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region"},{"EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"transmembrane_domain","STATUS":"visible|OK","END":"512","START":"490"}] \ No newline at end of file +[{"STATUS":"hidden|threshold","START":"1","EVALUE":"30933.3535994808","TYPE":"SMART","DOMAIN":"AlaDh_PNT_C","END":"92"},{"END":"52","EVALUE":"0.0077","STATUS":"hidden|threshold","START":"1","DOMAIN":"Pfam:IlvN","TYPE":"PFAM"},{"END":"47","EVALUE":"0.0003","STATUS":"hidden|threshold","START":"2","DOMAIN":"Pfam:Thi4","TYPE":"PFAM"},{"EVALUE":"0.0011","STATUS":"hidden|threshold","START":"2","TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox_2","END":"53"},{"END":"93","EVALUE":"0.0037","STATUS":"hidden|threshold","START":"2","DOMAIN":"Pfam:AlaDh_PNT_C","TYPE":"PFAM"},{"TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox_3","STATUS":"hidden|threshold","START":"3","EVALUE":"2.3","END":"88"},{"END":"51","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","STATUS":"hidden|threshold","EVALUE":"0.00015","START":"4"},{"TYPE":"PFAM","DOMAIN":"Pfam:HI0933_like","EVALUE":"0.017","STATUS":"hidden|threshold","START":"5","END":"44"},{"EVALUE":"33445.8578229311","STATUS":"hidden|threshold","START":"6","DOMAIN":"Semialdhyde_dh","TYPE":"SMART","END":"71"},{"STATUS":"hidden|threshold","START":"6","EVALUE":"6.8e-06","TYPE":"PFAM","DOMAIN":"Pfam:DAO","END":"199"},{"DOMAIN":"Pfam:FAD_oxidored","TYPE":"PFAM","EVALUE":"1.3e-05","STATUS":"hidden|threshold","START":"6","END":"51"},{"END":"45","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","START":"6","STATUS":"visible|OK","EVALUE":"0.00014"},{"EVALUE":"0.0026","STATUS":"hidden|threshold","START":"6","DOMAIN":"Pfam:Pyr_redox","TYPE":"PFAM","END":"51"},{"END":"95","DOMAIN":"Pfam:GIDA","TYPE":"PFAM","EVALUE":"0.046","STATUS":"hidden|threshold","START":"6"},{"END":"54","DOMAIN":"Pfam:Lycopene_cycl","TYPE":"PFAM","STATUS":"hidden|threshold","EVALUE":"0.092","START":"6"},{"END":"41","START":"6","STATUS":"hidden|threshold","EVALUE":"0.32","DOMAIN":"Pfam:Trp_halogenase","TYPE":"PFAM"},{"STATUS":"hidden|threshold","EVALUE":"0.81","START":"6","TYPE":"PFAM","DOMAIN":"Pfam:3HCDH_N","END":"58"},{"END":"95","DOMAIN":"RHO","TYPE":"SMART","STATUS":"hidden|threshold","START":"7","EVALUE":"1408.30964173531"},{"STATUS":"hidden|threshold","EVALUE":"1.1","START":"7","DOMAIN":"Pfam:TrkA_N","TYPE":"PFAM","END":"56"},{"END":"75","STATUS":"visible|OK","EVALUE":"1e-12","START":"9","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8"},{"TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","EVALUE":"3.2e-71","START":"14","END":"451"},{"END":"141","DOMAIN":"Fapy_DNA_glyco","TYPE":"SMART","START":"30","STATUS":"hidden|threshold","EVALUE":"84644.2966082717"},{"TYPE":"SMART","DOMAIN":"Dynein_light","START":"44","STATUS":"hidden|threshold","EVALUE":"51136.8774244005","END":"121"},{"DOMAIN":"GGL","TYPE":"SMART","STATUS":"hidden|threshold","START":"61","EVALUE":"571.480606829398","END":"121"},{"END":"179","START":"137","STATUS":"hidden|threshold","EVALUE":"1537.7843005764","TYPE":"SMART","DOMAIN":"PLP"},{"START":"137","STATUS":"hidden|threshold","EVALUE":"129170.041311882","DOMAIN":"DUF4187","TYPE":"SMART","END":"178"},{"TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox_2","START":"189","STATUS":"hidden|threshold","EVALUE":"7.2e+02","END":"265"},{"TYPE":"SMART","DOMAIN":"GIYc","START":"192","STATUS":"hidden|threshold","EVALUE":"865.846926520416","END":"274"},{"START":"193","STATUS":"hidden|threshold","EVALUE":"1251.28367939458","DOMAIN":"KH","TYPE":"SMART","END":"266"},{"END":"266","TYPE":"PFAM","DOMAIN":"Pfam:TrkA_N","STATUS":"hidden|threshold","EVALUE":"1.3e+02","START":"210"},{"START":"218","STATUS":"hidden|threshold","EVALUE":"19","DOMAIN":"Pfam:Pyr_redox_3","TYPE":"PFAM","END":"265"},{"STATUS":"hidden|threshold","EVALUE":"3.3e+03","START":"235","TYPE":"PFAM","DOMAIN":"Pfam:3HCDH_N","END":"282"},{"EVALUE":"8.1e+03","STATUS":"hidden|threshold","START":"329","DOMAIN":"Pfam:TrkA_N","TYPE":"PFAM","END":"375"},{"END":"377","DOMAIN":"DnaJ","TYPE":"SMART","START":"335","STATUS":"hidden|threshold","EVALUE":"476.301934189143"},{"END":"430","TYPE":"SMART","DOMAIN":"HELICc2","EVALUE":"239.70161728886","STATUS":"hidden|threshold","START":"337"},{"END":"363","DOMAIN":"DUF1713","TYPE":"SMART","STATUS":"hidden|threshold","EVALUE":"170644.3529947","START":"340"},{"END":"456","START":"392","STATUS":"hidden|threshold","EVALUE":"1.8e+02","TYPE":"PFAM","DOMAIN":"Pfam:GIDA"},{"END":"449","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","STATUS":"hidden|overlap","EVALUE":"0","START":"437"},{"END":"512","DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","START":"490","STATUS":"visible|OK","EVALUE":"0"},{"TYPE":"SMART","DOMAIN":"IQ","STATUS":"hidden|threshold","EVALUE":"808.328375610961","START":"494","END":"516"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSPTRP00000037441_SMART_results.txt --- a/test-data/ENSPTRP00000037441_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSPTRP00000037441_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -1,36 +1,268 @@ + -- SMART RESULT TEXTFORMAT -- -CRC_PASSED=1 -NUMBER_OF_FEATURES_FOUND=6 +CRC_PASSED=0 +NUMBER_OF_FEATURES_FOUND=40 + +DOMAIN=AlaDh_PNT_C +START=1 +END=92 +EVALUE=30933.3535994808 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Pfam:IlvN +START=1 +END=52 +EVALUE=0.0077 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:Thi4 +START=2 +END=47 +EVALUE=0.0003 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:Pyr_redox_2 +START=2 +END=53 +EVALUE=0.0011 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:AlaDh_PNT_C +START=2 +END=93 +EVALUE=0.0037 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:Pyr_redox_3 +START=3 +END=88 +EVALUE=2.3 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:FAD_binding_3 +START=4 +END=51 +EVALUE=0.00015 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:HI0933_like +START=5 +END=44 +EVALUE=0.017 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Semialdhyde_dh +START=6 +END=71 +EVALUE=33445.8578229311 +TYPE=SMART +STATUS=hidden|threshold DOMAIN=Pfam:DAO START=6 -END=211 -EVALUE=8.8e-08 +END=199 +EVALUE=6.8e-06 TYPE=PFAM -STATUS=visible|OK +STATUS=hidden|threshold + +DOMAIN=Pfam:FAD_oxidored +START=6 +END=51 +EVALUE=1.3e-05 +TYPE=PFAM +STATUS=hidden|threshold DOMAIN=Pfam:FAD_binding_2 START=6 END=45 -EVALUE=1.2e-06 +EVALUE=0.00014 TYPE=PFAM STATUS=visible|OK +DOMAIN=Pfam:Pyr_redox +START=6 +END=51 +EVALUE=0.0026 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:GIDA +START=6 +END=95 +EVALUE=0.046 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:Lycopene_cycl +START=6 +END=54 +EVALUE=0.092 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:Trp_halogenase +START=6 +END=41 +EVALUE=0.32 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:3HCDH_N +START=6 +END=58 +EVALUE=0.81 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=RHO +START=7 +END=95 +EVALUE=1408.30964173531 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Pfam:TrkA_N +START=7 +END=56 +EVALUE=1.1 +TYPE=PFAM +STATUS=hidden|threshold + DOMAIN=Pfam:NAD_binding_8 START=9 END=75 -EVALUE=5.2e-15 +EVALUE=1e-12 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=14 END=451 -EVALUE=7.1e-74 +EVALUE=3.2e-71 TYPE=PFAM STATUS=visible|OK +DOMAIN=Fapy_DNA_glyco +START=30 +END=141 +EVALUE=84644.2966082717 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Dynein_light +START=44 +END=121 +EVALUE=51136.8774244005 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=GGL +START=61 +END=121 +EVALUE=571.480606829398 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=PLP +START=137 +END=179 +EVALUE=1537.7843005764 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=DUF4187 +START=137 +END=178 +EVALUE=129170.041311882 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Pfam:Pyr_redox_2 +START=189 +END=265 +EVALUE=7.2e+02 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=GIYc +START=192 +END=274 +EVALUE=865.846926520416 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=KH +START=193 +END=266 +EVALUE=1251.28367939458 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Pfam:TrkA_N +START=210 +END=266 +EVALUE=1.3e+02 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:Pyr_redox_3 +START=218 +END=265 +EVALUE=19 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:3HCDH_N +START=235 +END=282 +EVALUE=3.3e+03 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=Pfam:TrkA_N +START=329 +END=375 +EVALUE=8.1e+03 +TYPE=PFAM +STATUS=hidden|threshold + +DOMAIN=DnaJ +START=335 +END=377 +EVALUE=476.301934189143 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=HELICc2 +START=337 +END=430 +EVALUE=239.70161728886 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=DUF1713 +START=340 +END=363 +EVALUE=170644.3529947 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Pfam:GIDA +START=392 +END=456 +EVALUE=1.8e+02 +TYPE=PFAM +STATUS=hidden|threshold + DOMAIN=low_complexity_region START=437 END=449 @@ -45,4 +277,11 @@ TYPE=INTRINSIC STATUS=visible|OK +DOMAIN=IQ +START=494 +END=516 +EVALUE=808.328375610961 +TYPE=SMART +STATUS=hidden|threshold + -- FINISHED -- diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSRNOP00000043466_SMART_results.json --- a/test-data/ENSRNOP00000043466_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSRNOP00000043466_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"DOMAIN":"Pfam:NAD_binding_8","START":"1","STATUS":"visible|OK","END":"59","TYPE":"PFAM","EVALUE":"5.7e-10"},{"EVALUE":"8.8e-71","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","END":"435","START":"1"},{"DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"433","START":"421","EVALUE":"0","TYPE":"INTRINSIC"},{"DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"487","START":"470","EVALUE":"0","TYPE":"INTRINSIC"},{"EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"transmembrane_domain","START":"473","STATUS":"visible|OK","END":"495"}] \ No newline at end of file +[{"EVALUE":"5.3e-68","STATUS":"visible|OK","START":"1","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","END":"435"},{"END":"59","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","STATUS":"visible|OK","EVALUE":"1.2e-07","START":"1"},{"END":"105","DOMAIN":"Dynein_light","TYPE":"SMART","EVALUE":"67054.8358179787","STATUS":"hidden|threshold","START":"33"},{"END":"105","DOMAIN":"GGL","TYPE":"SMART","STATUS":"hidden|threshold","EVALUE":"874.738631875967","START":"45"},{"END":"163","DOMAIN":"PLP","TYPE":"SMART","EVALUE":"825.048640862149","STATUS":"hidden|threshold","START":"121"},{"END":"216","DOMAIN":"LU","TYPE":"SMART","START":"127","STATUS":"hidden|threshold","EVALUE":"1177.01388348385"},{"DOMAIN":"KH","TYPE":"SMART","EVALUE":"752.437837788288","STATUS":"hidden|threshold","START":"177","END":"250"},{"END":"273","DOMAIN":"Semialdhyde_dh","TYPE":"SMART","STATUS":"hidden|threshold","START":"194","EVALUE":"117653.158760542"},{"STATUS":"hidden|threshold","EVALUE":"145407.936777029","START":"204","TYPE":"SMART","DOMAIN":"Iso_dh","END":"446"},{"END":"347","STATUS":"hidden|threshold","START":"320","EVALUE":"62249.017211402","DOMAIN":"DUF1713","TYPE":"SMART"},{"END":"443","EVALUE":"1231.55173510477","STATUS":"hidden|threshold","START":"346","DOMAIN":"TOPRIM","TYPE":"SMART"},{"END":"433","EVALUE":"0","STATUS":"hidden|overlap","START":"421","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC"},{"END":"487","STATUS":"hidden|overlap","START":"470","EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region"},{"TYPE":"INTRINSIC","DOMAIN":"transmembrane_domain","STATUS":"visible|OK","EVALUE":"0","START":"473","END":"495"},{"TYPE":"SMART","DOMAIN":"IQ","STATUS":"hidden|threshold","EVALUE":"981.716383425574","START":"478","END":"500"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSRNOP00000043466_SMART_results.txt --- a/test-data/ENSRNOP00000043466_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSRNOP00000043466_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -1,21 +1,85 @@ + -- SMART RESULT TEXTFORMAT -- -CRC_PASSED=1 -NUMBER_OF_FEATURES_FOUND=5 +CRC_PASSED=0 +NUMBER_OF_FEATURES_FOUND=15 + +DOMAIN=Pfam:Amino_oxidase +START=1 +END=435 +EVALUE=5.3e-68 +TYPE=PFAM +STATUS=visible|OK DOMAIN=Pfam:NAD_binding_8 START=1 END=59 -EVALUE=5.7e-10 +EVALUE=1.2e-07 TYPE=PFAM STATUS=visible|OK -DOMAIN=Pfam:Amino_oxidase -START=1 -END=435 -EVALUE=8.8e-71 -TYPE=PFAM -STATUS=visible|OK +DOMAIN=Dynein_light +START=33 +END=105 +EVALUE=67054.8358179787 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=GGL +START=45 +END=105 +EVALUE=874.738631875967 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=PLP +START=121 +END=163 +EVALUE=825.048640862149 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=LU +START=127 +END=216 +EVALUE=1177.01388348385 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=KH +START=177 +END=250 +EVALUE=752.437837788288 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Semialdhyde_dh +START=194 +END=273 +EVALUE=117653.158760542 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Iso_dh +START=204 +END=446 +EVALUE=145407.936777029 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=DUF1713 +START=320 +END=347 +EVALUE=62249.017211402 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=TOPRIM +START=346 +END=443 +EVALUE=1231.55173510477 +TYPE=SMART +STATUS=hidden|threshold DOMAIN=low_complexity_region START=421 @@ -38,4 +102,11 @@ TYPE=INTRINSIC STATUS=visible|OK +DOMAIN=IQ +START=478 +END=500 +EVALUE=981.716383425574 +TYPE=SMART +STATUS=hidden|threshold + -- FINISHED -- diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSRNOP00000063784_SMART_results.json --- a/test-data/ENSRNOP00000063784_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSRNOP00000063784_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"TYPE":"PFAM","EVALUE":"1.2e-09","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"169","START":"15"},{"TYPE":"PFAM","EVALUE":"3.1e-07","DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","END":"55","START":"15"},{"DOMAIN":"Pfam:NAD_binding_8","START":"18","STATUS":"visible|OK","END":"84","EVALUE":"2.8e-17","TYPE":"PFAM"},{"DOMAIN":"Pfam:Amino_oxidase","START":"23","STATUS":"visible|OK","END":"460","EVALUE":"1e-74","TYPE":"PFAM"},{"TYPE":"INTRINSIC","EVALUE":"0","END":"459","STATUS":"hidden|overlap","START":"446","DOMAIN":"low_complexity_region"}] \ No newline at end of file +[{"TYPE":"PFAM","DOMAIN":"Pfam:DAO","START":"15","STATUS":"visible|OK","EVALUE":"1.9e-09","END":"169"},{"END":"55","START":"15","STATUS":"visible|OK","EVALUE":"7.6e-07","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM"},{"EVALUE":"1.6e-16","STATUS":"visible|OK","START":"18","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","END":"84"},{"END":"460","DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM","EVALUE":"2.2e-73","STATUS":"visible|OK","START":"23"},{"END":"459","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","EVALUE":"0","STATUS":"hidden|overlap","START":"446"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSRNOP00000063784_SMART_results.txt --- a/test-data/ENSRNOP00000063784_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSRNOP00000063784_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -6,28 +6,28 @@ DOMAIN=Pfam:DAO START=15 END=169 -EVALUE=1.2e-09 +EVALUE=1.9e-09 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:FAD_binding_2 START=15 END=55 -EVALUE=3.1e-07 +EVALUE=7.6e-07 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:NAD_binding_8 START=18 END=84 -EVALUE=2.8e-17 +EVALUE=1.6e-16 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=23 END=460 -EVALUE=1e-74 +EVALUE=2.2e-73 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSSSCP00000013044_SMART_results.json --- a/test-data/ENSSSCP00000013044_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSSSCP00000013044_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"DOMAIN":"Pfam:FAD_binding_3","STATUS":"visible|OK","END":"62","START":"13","TYPE":"PFAM","EVALUE":"2.5e-09"},{"START":"14","END":"25","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"END":"58","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:Pyr_redox","EVALUE":"3.3e-07","TYPE":"PFAM"},{"TYPE":"PFAM","EVALUE":"6.8e-09","END":"105","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO"},{"TYPE":"PFAM","EVALUE":"1.1e-07","START":"15","END":"55","STATUS":"visible|OK","DOMAIN":"Pfam:FAD_binding_2"},{"DOMAIN":"Pfam:NAD_binding_8","STATUS":"visible|OK","END":"84","START":"18","EVALUE":"2.4e-16","TYPE":"PFAM"},{"EVALUE":"6.5e-77","TYPE":"PFAM","START":"23","END":"460","STATUS":"visible|OK","DOMAIN":"Pfam:Amino_oxidase"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"71","START":"60"},{"END":"458","STATUS":"hidden|overlap","START":"446","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"transmembrane_domain","START":"497","STATUS":"visible|OK","END":"519"}] \ No newline at end of file +[{"END":"62","DOMAIN":"Pfam:FAD_binding_3","TYPE":"PFAM","START":"13","STATUS":"visible|OK","EVALUE":"7.2e-09"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","START":"14","STATUS":"hidden|overlap","EVALUE":"0","END":"25"},{"START":"15","STATUS":"visible|OK","EVALUE":"1e-08","DOMAIN":"Pfam:DAO","TYPE":"PFAM","END":"108"},{"END":"55","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","EVALUE":"3.2e-07","STATUS":"visible|OK","START":"15"},{"END":"58","STATUS":"visible|OK","EVALUE":"1e-06","START":"15","DOMAIN":"Pfam:Pyr_redox","TYPE":"PFAM"},{"END":"84","EVALUE":"1.7e-15","STATUS":"visible|OK","START":"18","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8"},{"DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM","EVALUE":"6.3e-76","STATUS":"visible|OK","START":"23","END":"460"},{"END":"71","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","START":"60","EVALUE":"0"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","STATUS":"hidden|overlap","EVALUE":"0","START":"446","END":"458"},{"END":"519","STATUS":"visible|OK","EVALUE":"0","START":"497","DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSSSCP00000013044_SMART_results.txt --- a/test-data/ENSSSCP00000013044_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSSSCP00000013044_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -6,7 +6,7 @@ DOMAIN=Pfam:FAD_binding_3 START=13 END=62 -EVALUE=2.5e-09 +EVALUE=7.2e-09 TYPE=PFAM STATUS=visible|OK @@ -17,38 +17,38 @@ TYPE=INTRINSIC STATUS=hidden|overlap -DOMAIN=Pfam:Pyr_redox -START=15 -END=58 -EVALUE=3.3e-07 -TYPE=PFAM -STATUS=visible|OK - DOMAIN=Pfam:DAO START=15 -END=105 -EVALUE=6.8e-09 +END=108 +EVALUE=1e-08 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:FAD_binding_2 START=15 END=55 -EVALUE=1.1e-07 +EVALUE=3.2e-07 +TYPE=PFAM +STATUS=visible|OK + +DOMAIN=Pfam:Pyr_redox +START=15 +END=58 +EVALUE=1e-06 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:NAD_binding_8 START=18 END=84 -EVALUE=2.4e-16 +EVALUE=1.7e-15 TYPE=PFAM STATUS=visible|OK DOMAIN=Pfam:Amino_oxidase START=23 END=460 -EVALUE=6.5e-77 +EVALUE=6.3e-76 TYPE=PFAM STATUS=visible|OK diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSSSCP00000028353_SMART_results.json --- a/test-data/ENSSSCP00000028353_SMART_results.json Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSSSCP00000028353_SMART_results.json Tue Dec 22 04:29:12 2020 +0000 @@ -1,1 +1,1 @@ -[{"TYPE":"PFAM","EVALUE":"1.9e-09","DOMAIN":"Pfam:NAD_binding_8","START":"1","STATUS":"visible|OK","END":"59"},{"EVALUE":"9.8e-76","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","END":"435","START":"1"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"433","START":"421"},{"DOMAIN":"transmembrane_domain","START":"474","STATUS":"visible|OK","END":"496","TYPE":"INTRINSIC","EVALUE":"0"}] \ No newline at end of file +[{"END":"435","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","START":"1","EVALUE":"2.7e-73"},{"TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","STATUS":"visible|OK","START":"1","EVALUE":"3.3e-07","END":"59"},{"END":"105","STATUS":"hidden|threshold","EVALUE":"283.309567345626","START":"45","TYPE":"SMART","DOMAIN":"GGL"},{"STATUS":"hidden|threshold","START":"63","EVALUE":"346.27650894861","TYPE":"SMART","DOMAIN":"BRIGHT","END":"165"},{"STATUS":"hidden|threshold","EVALUE":"1521.18401530361","START":"115","TYPE":"SMART","DOMAIN":"GLUCA","END":"140"},{"DOMAIN":"PLP","TYPE":"SMART","STATUS":"hidden|threshold","START":"121","EVALUE":"1713.48530278146","END":"163"},{"STATUS":"hidden|threshold","START":"121","EVALUE":"163349.032061676","TYPE":"SMART","DOMAIN":"DUF4187","END":"162"},{"END":"284","DOMAIN":"PTPc_motif","TYPE":"SMART","START":"144","STATUS":"hidden|threshold","EVALUE":"1396.15053915469"},{"DOMAIN":"GIYc","TYPE":"SMART","STATUS":"hidden|threshold","START":"176","EVALUE":"628.116969347314","END":"258"},{"END":"250","TYPE":"SMART","DOMAIN":"KH","START":"177","STATUS":"hidden|threshold","EVALUE":"1355.82882112978"},{"DOMAIN":"Semialdhyde_dh","TYPE":"SMART","STATUS":"hidden|threshold","START":"194","EVALUE":"65441.294146274","END":"272"},{"END":"347","DOMAIN":"DUF1713","TYPE":"SMART","STATUS":"hidden|threshold","START":"320","EVALUE":"111634.630322951"},{"END":"497","STATUS":"hidden|threshold","START":"386","EVALUE":"96607.3554010613","TYPE":"SMART","DOMAIN":"RES"},{"END":"433","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","EVALUE":"0","START":"421"},{"DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"visible|OK","START":"474","END":"496"},{"DOMAIN":"IQ","TYPE":"SMART","START":"478","STATUS":"hidden|threshold","EVALUE":"1096.98299469282","END":"500"}] \ No newline at end of file diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSSSCP00000028353_SMART_results.txt --- a/test-data/ENSSSCP00000028353_SMART_results.txt Thu Jun 15 07:52:09 2017 -0400 +++ b/test-data/ENSSSCP00000028353_SMART_results.txt Tue Dec 22 04:29:12 2020 +0000 @@ -1,21 +1,99 @@ + -- SMART RESULT TEXTFORMAT -- -CRC_PASSED=1 -NUMBER_OF_FEATURES_FOUND=4 +CRC_PASSED=0 +NUMBER_OF_FEATURES_FOUND=16 + +DOMAIN=Pfam:Amino_oxidase +START=1 +END=435 +EVALUE=2.7e-73 +TYPE=PFAM +STATUS=visible|OK DOMAIN=Pfam:NAD_binding_8 START=1 END=59 -EVALUE=1.9e-09 +EVALUE=3.3e-07 TYPE=PFAM STATUS=visible|OK -DOMAIN=Pfam:Amino_oxidase -START=1 -END=435 -EVALUE=9.8e-76 -TYPE=PFAM -STATUS=visible|OK +DOMAIN=GGL +START=45 +END=105 +EVALUE=283.309567345626 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=BRIGHT +START=63 +END=165 +EVALUE=346.27650894861 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=GLUCA +START=115 +END=140 +EVALUE=1521.18401530361 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=PLP +START=121 +END=163 +EVALUE=1713.48530278146 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=DUF4187 +START=121 +END=162 +EVALUE=163349.032061676 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=PTPc_motif +START=144 +END=284 +EVALUE=1396.15053915469 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=GIYc +START=176 +END=258 +EVALUE=628.116969347314 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=KH +START=177 +END=250 +EVALUE=1355.82882112978 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=Semialdhyde_dh +START=194 +END=272 +EVALUE=65441.294146274 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=DUF1713 +START=320 +END=347 +EVALUE=111634.630322951 +TYPE=SMART +STATUS=hidden|threshold + +DOMAIN=RES +START=386 +END=497 +EVALUE=96607.3554010613 +TYPE=SMART +STATUS=hidden|threshold DOMAIN=low_complexity_region START=421 @@ -31,4 +109,11 @@ TYPE=INTRINSIC STATUS=visible|OK +DOMAIN=IQ +START=478 +END=500 +EVALUE=1096.98299469282 +TYPE=SMART +STATUS=hidden|threshold + -- FINISHED --