Mercurial > repos > earlhaminst > t_coffee

comparison t_coffee.xml @ 1:b3833e5b50d4 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit 011cabb2a2b3237bbbc4850ed26972816702a2ba-dirty
author earlhaminst
date Mon, 19 Dec 2016 17:47:31 -0500
parents 794a6e864a96
children df6527887a18
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0:794a6e864a96 1:b3833e5b50d4
49 #end if 49 #end if
50 50
51 t_coffee '$input' $method_opt $output_opt -n_core \${GALAXY_SLOTS:-1} -run_name t_coffee_out -quiet 51 t_coffee '$input' $method_opt $output_opt -n_core \${GALAXY_SLOTS:-1} -run_name t_coffee_out -quiet
52 52
53 #if 'cigar' in $outputs_arr 53 #if 'cigar' in $outputs_arr
54 && perl '$__tool_directory__/t_coffee_to_cigar.pl' t_coffee_out.fasta_aln > '$cigar' 54 && python '$__tool_directory__/t_coffee_to_cigar.py' t_coffee_out.fasta_aln > '$cigar'
55 #end if 55 #end if
56 ]]> 56 ]]>
57 </command> 57 </command>
58 <inputs> 58 <inputs>
59 <conditional name="input_type"> 59 <conditional name="input_type">