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comparison t_coffee.xml @ 6:c67bd5acbae2 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit 79c2cb2362b64134df778cc484e426642eb6895e
author earlhaminst
date Wed, 25 Apr 2018 11:15:13 -0400
parents a91be6005274
children 0a189243186d
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5:a91be6005274 6:c67bd5acbae2
7 <exit_code range="1:" level="fatal" /> 7 <exit_code range="1:" level="fatal" />
8 </stdio> 8 </stdio>
9 <version_command> 9 <version_command>
10 t_coffee -version | grep Version 10 t_coffee -version | grep Version
11 </version_command> 11 </version_command>
12 <command> 12 <command use_shared_home="false">
13 <![CDATA[ 13 <![CDATA[
14 #if str($input_type.filter_fasta) == 'yes' 14 #if str($input_type.filter_fasta) == 'yes'
15 #set $input = 'temp.fasta' 15 #set $input = 'temp.fasta'
16 python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' > temp.fasta && 16 python '$__tool_directory__/filter_by_fasta_ids.py' '$input_type.identifiers' '$input_type.fasta_input' > temp.fasta &&
17 #end if 17 #end if