Mercurial > repos > earlhaminst > t_coffee

diff t_coffee.xml @ 10:ce83c3f83561 draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/t_coffee commit a0d7ab86b86bb764e457767bf8e8bc29868d0cbb
author earlhaminst
date Mon, 10 Mar 2025 23:36:23 +0000
parents e3507be607eb
children
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--- a/t_coffee.xml	Mon Feb 24 11:00:35 2025 +0000
+++ b/t_coffee.xml	Mon Mar 10 23:36:23 2025 +0000
@@ -134,24 +134,30 @@
     </outputs>
     <tests>
         <test expect_num_outputs="1">
-            <param name="filter_fasta" value="no" />
-            <param name="input" value="input.fasta" ftype="fasta" />
+            <conditional name="input_type">
+                <param name="filter_fasta" value="no" />
+                <param name="input" value="input.fasta" ftype="fasta" />
+            </conditional>
             <param name="method02" value="clustalw_msa" />
             <param name="outputs" value="fasta_aln" />
             <output name="fasta_aln" file="output1.fasta" />
         </test>
         <test expect_num_outputs="1">
-            <param name="filter_fasta" value="yes" />
-            <param name="fasta_input" value="input.fasta" ftype="fasta" />
-            <param name="identifiers" value="ids.txt" ftype="txt" />
+            <conditional name="input_type">
+                <param name="filter_fasta" value="yes" />
+                <param name="fasta_input" value="input.fasta" ftype="fasta" />
+                <param name="identifiers" value="ids.txt" ftype="txt" />
+            </conditional>
             <param name="method02" value="clustalw_msa" />
             <param name="outputs" value="fasta_aln" />
             <output name="fasta_aln" file="output2.fasta" />
         </test>
         <!-- Test all non-builtin methods and all outputs -->
         <test expect_num_outputs="10">
-            <param name="filter_fasta" value="no" />
-            <param name="input" value="input.fasta" ftype="fasta" />
+            <conditional name="input_type">
+                <param name="filter_fasta" value="no" />
+                <param name="input" value="input.fasta" ftype="fasta" />
+            </conditional>
             <param name="method03" value="clustalw_pair,t_coffee_pair" />
             <param name="method01" value="sap_pair,mustang_pair,TMalign_pair" />
             <param name="method02" value="mafft_msa,clustalw_msa,dialigntx_msa,poa_msa,probcons_msa,muscle_msa,t_coffee_msa,kalign_msa" />