Mercurial > repos > ebi-gxa > ct_combine_tool_outputs

comparison ct_macros.xml @ 4:846b34f8755e draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 8c1bd2ab8a3f988e205677a3bb1ffda1e5694fe1"
author ebi-gxa
date Wed, 17 Jun 2020 12:30:31 -0400
parents 44b6219cba2d
children 844689a7f66e
comparison
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3:44b6219cba2d 4:846b34f8755e
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.0.0</token> 2 <token name="@TOOL_VERSION@">1.1.0</token>
3 <token name="@HELP@">More information can be found at https://github.com/ebi-gene-expression-group/cell-types-analysis</token> 3 <token name="@HELP@">More information can be found at https://github.com/ebi-gene-expression-group/cell-types-analysis</token>
4 <token name="@PROFILE@">18.01</token> 4 <token name="@PROFILE@">18.01</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.0.8">cell-types-analysis</requirement> 7 <requirement type="package" version="0.1.1">cell-types-analysis</requirement>
8 <yield/> 8 <yield/>
9 </requirements> 9 </requirements>
10 </xml> 10 </xml>
11 <xml name="version"> 11 <xml name="version">
12 <version_command><![CDATA[ 12 <version_command><![CDATA[
16 <token name="@VERSION_HISTORY@"><![CDATA[ 16 <token name="@VERSION_HISTORY@"><![CDATA[
17 **Version history** 17 **Version history**
18 0.0.5+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/. 18 0.0.5+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
19 0.0.5+galaxy1: Standardise input/output format into .txt. 19 0.0.5+galaxy1: Standardise input/output format into .txt.
20 ]]></token> 20 ]]></token>
21 <xml name="sem_siml_options">
22 <param type="select" name="sem_siml_metric" label="Semantic similarity metric" help="What semantic similarity metric should be used? NB: if include-sem-siml is set to True, make sure to use a metric that is in the [0;1] interval. See https://www.bioconductor.org/packages/release/bioc/html/Onassis.html for more detail.">
23 <option value="lin" selected="true">lin</option>
24 <option value="jaccard">jaccard</option>
25 <option value="jc_norm">jc_norm</option>
26 <option value="schlicker">schlicker</option>
27 <option value="edge_resnik">edge_resnik</option>
28 <option value="sim">sim</option>
29 <option value="edge_leachod">edge_leachod</option>
30 <option value="edge_slimani">edge_slimani</option>
31 <option value="edge_wupalmer">edge_wupalmer</option>
32 <option value="edge_rada_lca">edge_rada_lca</option>
33 <option value="edge_li">edge_li</option>
34 <option value="resnik">resnik</option>
35 </param>
36 </xml>
21 <xml name="citations"> 37 <xml name="citations">
22 <citations> 38 <citations>
23 <citation type="bibtex"> 39 <citation type="bibtex">
24 @misc{github-cell-types-analysis.git, 40 @misc{github-cell-types-analysis.git,
25 author = {Andrey Solovyev, EBI Gene Expression Team}, 41 author = {Andrey Solovyev, EBI Gene Expression Team},