Mercurial > repos > ebi-gxa > ct_downsample_cells

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:37:59 +0000
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-1:000000000000 0:51816af2f7ac
1 <macros>
2 <token name="@TOOL_VERSION@">1.1.1</token>
3 <token name="@HELP@">More information can be found at https://github.com/ebi-gene-expression-group/cell-types-analysis</token>
4 <token name="@PROFILE@">18.01</token>
5 <xml name="requirements">
6 <requirements>
7 <requirement type="package" version="0.1.9">cell-types-analysis</requirement>
8 <yield/>
9 </requirements>
10 </xml>
11 <xml name="version">
12 <version_command><![CDATA[
13 conda list | grep cell-types-analysis | egrep -o [0-9]\.[0-9]\.[0-9]
14 ]]></version_command>
15 </xml>
16 <token name="@VERSION_HISTORY@"><![CDATA[
17 **Version history**
18 0.1.6+galaxy0: Add removing non-alphanumeric characters from labels in metadata files
19 0.0.5+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
20 0.0.5+galaxy1: Standardise input/output format into .txt.
21 ]]></token>
22 <xml name="sem_siml_options">
23 <param type="select" name="sem_siml_metric" label="Semantic similarity metric" help="What semantic similarity metric should be used? NB: if include-sem-siml is set to True, make sure to use a metric that is in the [0;1] interval. See https://www.bioconductor.org/packages/release/bioc/html/Onassis.html for more detail.">
24 <option value="lin" selected="true">lin</option>
25 <option value="jaccard">jaccard</option>
26 <option value="jc_norm">jc_norm</option>
27 <option value="schlicker">schlicker</option>
28 <option value="edge_resnik">edge_resnik</option>
29 <option value="sim">sim</option>
30 <option value="edge_leachod">edge_leachod</option>
31 <option value="edge_slimani">edge_slimani</option>
32 <option value="edge_wupalmer">edge_wupalmer</option>
33 <option value="edge_rada_lca">edge_rada_lca</option>
34 <option value="edge_li">edge_li</option>
35 <option value="resnik">resnik</option>
36 </param>
37 </xml>
38 <xml name="sanitize_strings">
39 <sanitizer invalid_char="">
40 <valid initial="string.ascii_letters,string.digits">
41 <add value="_" />
42 <add value="-" />
43 <add value="[" />
44 <add value="]" />
45 <add value=" " />
46 </valid>
47 </sanitizer>
48 </xml>
49 <xml name="citations">
50 <citations>
51 <citation type="bibtex">
52 @misc{github-cell-types-analysis.git,
53 author = {Andrey Solovyev, EBI Gene Expression Team},
54 year = {2020},
55 title = {Suite of scripts for analysis of scRNA-seq cell type classification tool outputs},
56 publisher = {GitHub},
57 journal = {GitHub repository},
58 url = {https://github.com/ebi-gene-expression-group/cell-types-analysis.git},
59 }
60 </citation>
61 <citation type="doi">10.1101/2020.04.08.032698</citation>
62 <yield />
63 </citations>
64 </xml>
65 </macros>