Mercurial > repos > ebi-gxa > ct_get_consensus_outputs

comparison ct_get_consensus_outputs.xml @ 2:94927cc336ba draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
author ebi-gxa
date Mon, 27 Apr 2020 09:26:09 -0400
parents a31bc9849f91
children 559fbff1f573
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1:a31bc9849f91 2:94927cc336ba
25 #if $semantic_sim_metric 25 #if $semantic_sim_metric
26 --semantic-sim-metric "${semantic_sim_metric}" 26 --semantic-sim-metric "${semantic_sim_metric}"
27 #end if 27 #end if
28 ]]></command> 28 ]]></command>
29 <inputs> 29 <inputs>
30 <param type="data" name="input_tables" label="Aggregated tables" format="tsv" multiple="true" help="Aggregated prediction tables from multiple tools" /> 30 <param type="data" name="input_tables" label="Aggregated tables" format="txt" multiple="true" help="Aggregated prediction tables from multiple tools" />
31 <param type="data" name="tool_table" format="tsv" label="Tools table" help="Table with tools performance metrics" /> 31 <param type="data" name="tool_table" format="txt" label="Tools table" help="Table with tools performance metrics" />
32 <param type="boolean" name="parallel" label="Parallel execution" checked="false" help="Should the table values be computed in parallel?" /> 32 <param type="boolean" name="parallel" label="Parallel execution" checked="false" help="Should the table values be computed in parallel?" />
33 <param type="data" name="exclusions" label="Exclusions file" format="yml" optional="true" help="Yaml file with trivial terms and unlabelled cells" /> 33 <param type="data" name="exclusions" label="Exclusions file" format="yml" optional="true" help="Yaml file with trivial terms and unlabelled cells" />
34 <param type="data" name="lab_cl_mapping" format="rdata" label="cl terms mapping" help="Label - CL term mapping" /> 34 <param type="data" name="lab_cl_mapping" format="rdata" label="cl terms mapping" help="Label - CL term mapping" />
35 <param type="data" name="ontology_graph" format="obo" label="Ontology graph" help="Ontology graph to run similairty calculations" /> 35 <param type="data" name="ontology_graph" format="obo" label="Ontology graph" help="Ontology graph to run similairty calculations" />
36 <param type="text" name="semantic_sim_metric" label="Semantic similarity metric" value="edge_resnik" help="Type of semantic similarity metric used" /> 36 <param type="text" name="semantic_sim_metric" label="Semantic similarity metric" value="edge_resnik" help="Type of semantic similarity metric used" />