Mercurial > repos > ebi-gxa > ct_get_consensus_outputs

comparison ct_macros.xml @ 7:0917f5e09d83 draft default tip

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:38:17 +0000
parents 32101a7373ae
children
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6:00abf723fc87 7:0917f5e09d83
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.1.0</token> 2 <token name="@TOOL_VERSION@">1.1.1</token>
3 <token name="@HELP@">More information can be found at https://github.com/ebi-gene-expression-group/cell-types-analysis</token> 3 <token name="@HELP@">More information can be found at https://github.com/ebi-gene-expression-group/cell-types-analysis</token>
4 <token name="@PROFILE@">18.01</token> 4 <token name="@PROFILE@">18.01</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.1.1">cell-types-analysis</requirement> 7 <requirement type="package" version="0.1.9">cell-types-analysis</requirement>
8 <yield/> 8 <yield/>
9 </requirements> 9 </requirements>
10 </xml> 10 </xml>
11 <xml name="version"> 11 <xml name="version">
12 <version_command><![CDATA[ 12 <version_command><![CDATA[
13 conda list | grep cell-types-analysis | egrep -o [0-9]\.[0-9]\.[0-9] 13 conda list | grep cell-types-analysis | egrep -o [0-9]\.[0-9]\.[0-9]
14 ]]></version_command> 14 ]]></version_command>
15 </xml> 15 </xml>
16 <token name="@VERSION_HISTORY@"><![CDATA[ 16 <token name="@VERSION_HISTORY@"><![CDATA[
17 **Version history** 17 **Version history**
18 0.1.6+galaxy0: Add removing non-alphanumeric characters from labels in metadata files
18 0.0.5+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/. 19 0.0.5+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
19 0.0.5+galaxy1: Standardise input/output format into .txt. 20 0.0.5+galaxy1: Standardise input/output format into .txt.
20 ]]></token> 21 ]]></token>
21 <xml name="sem_siml_options"> 22 <xml name="sem_siml_options">
22 <param type="select" name="sem_siml_metric" label="Semantic similarity metric" help="What semantic similarity metric should be used? NB: if include-sem-siml is set to True, make sure to use a metric that is in the [0;1] interval. See https://www.bioconductor.org/packages/release/bioc/html/Onassis.html for more detail."> 23 <param type="select" name="sem_siml_metric" label="Semantic similarity metric" help="What semantic similarity metric should be used? NB: if include-sem-siml is set to True, make sure to use a metric that is in the [0;1] interval. See https://www.bioconductor.org/packages/release/bioc/html/Onassis.html for more detail.">
32 <option value="edge_rada_lca">edge_rada_lca</option> 33 <option value="edge_rada_lca">edge_rada_lca</option>
33 <option value="edge_li">edge_li</option> 34 <option value="edge_li">edge_li</option>
34 <option value="resnik">resnik</option> 35 <option value="resnik">resnik</option>
35 </param> 36 </param>
36 </xml> 37 </xml>
38 <xml name="sanitize_strings">
39 <sanitizer invalid_char="">
40 <valid initial="string.ascii_letters,string.digits">
41 <add value="_" />
42 <add value="-" />
43 <add value="[" />
44 <add value="]" />
45 <add value=" " />
46 </valid>
47 </sanitizer>
48 </xml>
37 <xml name="citations"> 49 <xml name="citations">
38 <citations> 50 <citations>
39 <citation type="bibtex"> 51 <citation type="bibtex">
40 @misc{github-cell-types-analysis.git, 52 @misc{github-cell-types-analysis.git,
41 author = {Andrey Solovyev, EBI Gene Expression Team}, 53 author = {Andrey Solovyev, EBI Gene Expression Team},