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annotate ct_get_tool_pvals.xml @ 4:4290ef6cbb68 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 8c1bd2ab8a3f988e205677a3bb1ffda1e5694fe1"
author ebi-gxa
date Wed, 17 Jun 2020 12:32:20 -0400
parents 39f348e76f41
children 52df56743cd9
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39f348e76f41 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 85476ee7f3b1d96e9d0afb972af1aaa67d990ce4"
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1 <tool id="ct_get_tool_pvals" name="Cell types - get tool p-values" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
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2 <description>Get p-values for tool performance metrics</description>
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3 <macros>
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4 <import>ct_macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <command detect_errors="exit_code"><![CDATA[
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8 get_tool_pvals.R --input-table "${input_table}" --emp-dist-list "${emp_dist_list}" --output-table "${output_table}" ]]></command>
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9 <inputs>
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10 <param type="data" name="input_table" label="Table with tool stats" format="txt" help="Path to the table of tool statistics from get_tool_performance_table.R" />
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11 <param type="data" name="emp_dist_list" label="List of empirical distributions" format="rdata" help="Path to the list of empirical distributions in .rds format" />
f2ffa4fd4c2a "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
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12 </inputs>
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13 <outputs>
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14 <data name="output_table" format="txt" />
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15 </outputs>
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16 <tests>
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17 <test>
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18 <param name="input_table" value="tool_perf_table.tsv" />
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19 <param name="emp_dist_list" value="empirical_dist_list.rds" />
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20 <output name="output_table" file="tool_perf_pvals.tsv" compare="sim_size" />
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21 </test>
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22 </tests>
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23 <help><![CDATA[
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24 @HELP@
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25
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26 @VERSION_HISTORY@
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27 ]]></help>
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28 <expand macro="citations" />
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29 </tool>