Mercurial > repos > ebi-gxa > droplet_barcode_plot

comparison dropletBarcodePlot.xml @ 3:8f605643ccfd draft default tip

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/droplet-rank-plot/.shed.yml commit 39412ddc5dbeb136161a9d9fb0f9f78520159ccc"
author ebi-gxa
date Tue, 24 Mar 2020 12:03:14 -0400
parents 7782648d8b56
children
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2:7782648d8b56 3:8f605643ccfd
2 <description>Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data</description> 2 <description>Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.0.1">scxa-plots</requirement> 4 <requirement type="package" version="0.0.1">scxa-plots</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 $__tool_directory__/dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}" 7 dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}"
8 #if $input.type == 'mtx_matrix' 8 #if $input.type == 'mtx_matrix'
9 --mtx-matrix ${input.mtx_matrix} 9 --mtx-matrix ${input.mtx_matrix}
10 #if $input.cellsbyrow 10 #if $input.cellsbyrow
11 --cells-by-row 11 --cells-by-row
12 #end if 12 #end if