Mercurial > repos > ebi-gxa > droplet_barcode_plot
diff dropletBarcodePlot.xml @ 2:7782648d8b56 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/droplet-rank-plot/.shed.yml commit 6f31a23343fd7d0a834eebe268d820733eb483b5"
| author | ebi-gxa |
|---|---|
| date | Tue, 24 Mar 2020 07:14:22 -0400 |
| parents | 0e985680e67d |
| children | 8f605643ccfd |
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--- a/dropletBarcodePlot.xml Wed Mar 04 06:44:10 2020 -0500 +++ b/dropletBarcodePlot.xml Tue Mar 24 07:14:22 2020 -0400 @@ -1,13 +1,7 @@ -<tool id="_dropletBarcodePlot" name="Droplet barcode rank plot" version="1.6.1+galaxy1" profile="18.01"> +<tool id="_dropletBarcodePlot" name="Droplet barcode rank plot" version="1.6.1+galaxy2" profile="18.01"> <description>Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data</description> <requirements> - <requirement type="package" version="1.6.1">bioconductor-dropletutils</requirement> - <requirement type="package" version="0.3.9">openblas</requirement> - <requirement type="package" version="1.2">r-matrix</requirement> - <requirement type="package" version="3.2.1">r-ggplot2</requirement> - <requirement type="package" version="1.6.4">r-optparse</requirement> - <requirement type="package" version="2.3">r-gridextra</requirement> - <requirement type="package" version="0.12.0">bioconductor-delayedarray</requirement> + <requirement type="package" version="0.0.1">scxa-plots</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ $__tool_directory__/dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}"