--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_test_data.sh	Tue Feb 15 16:38:56 2022 +0000
@@ -0,0 +1,48 @@
+#!/usr/bin/env bash
+
+BASE_LINK="https://raw.githubusercontent.com/nunofonseca/fastq_utils/master/tests"
+
+BAR11_FILE="barcode_test_1.fastq.gz"
+BAR12_FILE="barcode_test_2.fastq.gz"
+BAR21_FILE="barcode_test2_1.fastq.gz"
+BAR22_FILE="barcode_test2_2.fastq.gz"
+INTER_FILE="inter.fastq.gz"
+A1_FILE="a_1.fastq.gz"
+POLYAT_FILE="poly_at.fastq.gz"
+POLYAT3_FILE="poly_at_len3.fastq.gz"
+TEST212_FILE="test_21_2.fastq.gz"
+
+BAR11_LINK=$BASE_LINK"/"$BAR11_FILE
+BAR12_LINK=$BASE_LINK"/"$BAR12_FILE
+BAR21_LINK=$BASE_LINK"/"$BAR21_FILE
+BAR22_LINK=$BASE_LINK"/"$BAR22_FILE
+INTER_LINK=$BASE_LINK"/"$INTER_FILE
+A1_LINK=$BASE_LINK"/"$A1_FILE
+POLYAT_LINK=$BASE_LINK"/"$POLYAT_FILE
+POLYAT3_LINK=$BASE_LINK"/"$POLYAT3_FILE
+TEST212_LINK=$BASE_LINK"/"$TEST212_FILE
+
+function get_data {
+  local link=$1
+  local fname=$2
+
+  if [ ! -f $fname ]; then
+    echo "$fname not available locally, downloading.."
+    wget -O $fname --retry-connrefused --waitretry=1 --read-timeout=20 --timeout=15 -t 3 $link
+  fi
+}
+
+# Get test data
+pushd test-data
+
+get_data $BAR11_LINK $BAR11_FILE
+get_data $BAR12_LINK $BAR12_FILE
+get_data $BAR21_LINK $BAR21_FILE
+get_data $BAR22_LINK $BAR22_FILE
+get_data $INTER_LINK $INTER_FILE
+get_data $A1_LINK $A1_FILE
+get_data $POLYAT_LINK $POLYAT_FILE
+get_data $TEST212_LINK $TEST212_FILE
+get_data $POLYAT3_LINK $POLYAT3_FILE
+get_data $TEST212_LINK $TEST212_FILE
+get_data $POLYAT3_LINK $POLYAT3_FILE