Mercurial > repos > ebi-gxa > garnett_train_classifier

comparison garnett_macros.xml @ 0:24a22971dd44 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 4c3dfa7bbd82d702e7e8187c7556f3289804cb49"
author ebi-gxa
date Wed, 08 Apr 2020 06:28:28 -0400
parents
children 2067ebe66b55
comparison
equal deleted inserted replaced
-1:000000000000 0:24a22971dd44
1 <macros>
2 <token name="@TOOL_VERSION@">0.2.8</token>
3 <token name="@HELP@">More information can be found at https://cole-trapnell-lab.github.io/garnett/docs/</token>
4 <token name="@PROFILE@">18.01</token>
5 <xml name="requirements">
6 <requirements>
7 <requirement type="package" version="0.0.3">garnett-cli</requirement>
8 <yield/>
9 </requirements>
10 </xml>
11 <xml name="version">
12 <version_command><![CDATA[
13 echo $(R --version | grep version | grep -v GNU)", garnett version" $(R --vanilla --slave -e "library(garnett); cat(sessionInfo()\$otherPkgs\$garnett\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
14 ]]></version_command>
15 </xml>
16 <token name="@VERSION_HISTORY@"><![CDATA[
17 **Version history**
18 0.2.8+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
19 ]]></token>
20 <xml name="citations">
21 <citations>
22 <citation type="bibtex">
23 @article{,
24 url = {https://doi.org/10.1038/s41592-019-0535-3},
25 author = {Hannah A. Pliner and Jay Shendure and Cole Trapnell},
26 title = {Supervised classification enables rapid annotation of cell atlases},
27 journal = {Nature Methods}
28 }
29 </citation>
30 <citation type="bibtex">
31 @misc{githubgarnett-cli.git,
32 author = {Andrey Solovyev, EBI Gene Expression Team},
33 year = {2019},
34 title = {garnett-cli: command line interface for Garnett tool},
35 publisher = {GitHub},
36 journal = {GitHub repository},
37 url = {https://github.com/ebi-gene-expression-group/garnett-cli.git},
38 }
39 </citation>
40 <yield />
41 </citations>
42 </xml>
43 </macros>
44