# HG changeset patch
# User ebi-gxa
# Date 1587994443 14400
# Node ID b35eef6b1fcc35847ec979f1fdd9434fae76e858
# Parent  211241c50ccf9078b646af0737ea62cf64b92269
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"

diff -r 211241c50ccf -r b35eef6b1fcc garnett_transform_markers.xml
--- a/garnett_transform_markers.xml	Fri Apr 24 11:21:40 2020 -0400
+++ b/garnett_transform_markers.xml	Mon Apr 27 09:34:03 2020 -0400
@@ -22,7 +22,6 @@
     ]]></command>
     <inputs>
         <param type="data" name="input_marker_file" format="txt" label="Input marker file" help="Path to the SCXA-style marker gene file in .txt format" />
-        <param type="data" name="marker_list" format="rdata" label="Marker list object" help="Path to a serialised object containing marker genes" />
         <param type="text" name="pval_col" value="pvals" label="p-value column name" help="Column name of marker p-values" />
         <param type="float" name="pval_threshold" value="0.05" label="p-value threshold" help="Cut-off p-value for marker genes" />
         <param type="text" name="groups_col" value="groups" label="groups column" help="Column name of cell groups (i.e. cluster IDs or cell types) in marker file" />
@@ -30,6 +29,7 @@
     </inputs>
     <outputs>
         <data name="garnett_marker_file" format="txt" />
+        <data name="marker_list" format="rdata" />
     </outputs>
     <tests>
         <test>