Mercurial > repos > ebi-gxa > monocle3_create

comparison monocle3-create.xml @ 3:46a523dc303f draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 660486ba0e1ef2f0195e7c6f75448221ba4640f7"
author ebi-gxa
date Tue, 28 Apr 2020 11:51:46 -0400
parents 2e446b0cb437
children
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2:2e446b0cb437 3:46a523dc303f
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 2 <tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
3 <description>a Monocle3 object from input data</description> 3 <description>a Monocle3 object from input data</description>
4 <macros> 4 <macros>
5 <import>monocle3-macros.xml</import> 5 <import>monocle3-macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
28 <inputs> 28 <inputs>
29 <param name="expression_matrix" argument="--expression-matrix" type="data" format="tabular,tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/> 29 <param name="expression_matrix" argument="--expression-matrix" type="data" format="tabular,tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/>
30 <param name="expression_matrix_format" type="select" label="Format of expression matrix"> 30 <param name="expression_matrix_format" type="select" label="Format of expression matrix">
31 <option value="rds" selected="true">RDS</option> 31 <option value="rds" selected="true">RDS</option>
32 <option value="tsv">TSV</option> 32 <option value="tsv">TSV</option>
33 <option value="mtx">MTX</option>
33 <option value="csv">CSV</option> 34 <option value="csv">CSV</option>
34 </param> 35 </param>
35 <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/> 36 <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/>
36 <param name="cell_metadata_format" type="select" label="Format of cell metadata"> 37 <param name="cell_metadata_format" type="select" label="Format of cell metadata">
37 <option value="rds" selected="true">RDS</option> 38 <option value="rds" selected="true">RDS</option>