Mercurial > repos > ebi-gxa > monocle3_create
diff monocle3-create.xml @ 1:a34f243f55a4 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 08ac0ad9182623944c4546f8ea8db6a1a537f7eb
author | ebi-gxa |
---|---|
date | Wed, 29 Jan 2020 10:40:25 -0500 |
parents | 75340a5e5fb0 |
children | 2e446b0cb437 |
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--- a/monocle3-create.xml Mon Sep 16 09:52:55 2019 -0400 +++ b/monocle3-create.xml Wed Jan 29 10:40:25 2020 -0500 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy0"> +<tool id="monocle3_create" name="Monocle3 create" version="@TOOL_VERSION@+galaxy1"> <description>a Monocle3 object from input data</description> <macros> <import>monocle3-macros.xml</import> @@ -26,19 +26,19 @@ ]]></command> <inputs> - <param name="expression_matrix" argument="--expression-matrix" type="data" format="tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/> + <param name="expression_matrix" argument="--expression-matrix" type="data" format="tabular,tsv,csv,rdata" label="Expression matrix, genes as rows, cells as columns. Required input. Provide as TSV, CSV or RDS."/> <param name="expression_matrix_format" type="select" label="Format of expression matrix"> <option value="rds" selected="true">RDS</option> <option value="tsv">TSV</option> <option value="csv">CSV</option> </param> - <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/> + <param name="cell_metadata" argument="--cell-metadata" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-cell annotation, optional. Row names must match the column names of the expression matrix. Provide as TSV, CSV or RDS."/> <param name="cell_metadata_format" type="select" label="Format of cell metadata"> <option value="rds" selected="true">RDS</option> <option value="tsv">TSV</option> <option value="csv">CSV</option> </param> - <param name="gene_annotation" argument="--gene-annotation" optional="true" type="data" format="tsv,csv,rdata" label="Per-gene annotation, optional. Row names must match the row names of the expression matrix. Provide as TSV, CSV or RDS."/> + <param name="gene_annotation" argument="--gene-annotation" optional="true" type="data" format="tabular,tsv,csv,rdata" label="Per-gene annotation, optional. Row names must match the row names of the expression matrix. Provide as TSV, CSV or RDS."/> <param name="gene_annotation_format" type="select" label="Format of gene annotation"> <option value="rds" selected="true">RDS</option> <option value="tsv">TSV</option>