# HG changeset patch
# User ebi-gxa
# Date 1573220564 18000
# Node ID 050b51d0f3c46beee21c6b07dd61b3b6ac4d24e5
# Parent  336ae8f0a0b225551e411b2bd1599aa47668fa12
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml commit 3fbbd818012005da4513271beda50df98d3c1cde-dirty

diff -r 336ae8f0a0b2 -r 050b51d0f3c4 salmonKallistoMtxTo10x.xml
--- a/salmonKallistoMtxTo10x.xml	Fri Nov 08 08:36:12 2019 -0500
+++ b/salmonKallistoMtxTo10x.xml	Fri Nov 08 08:42:44 2019 -0500
@@ -12,6 +12,7 @@
             matrixfile=matrix.mtx;
         fi;
         ln -s ${mtx_file} \$matrixfile;
+        echo -e $__tool_directory__/salmonKallistoMtxTo10x.py --cell_prefix "${cell_prefix}" "${mtx_file}" "${genes_file}" "${barcodes_file}" ./;
         $__tool_directory__/salmonKallistoMtxTo10x.py --cell_prefix "${cell_prefix}" "${mtx_file}" "${genes_file}" "${barcodes_file}" ./
 	    ]]></command>