Mercurial > repos > ebi-gxa > scanpy_compute_graph
diff scanpy-neighbours.xml @ 28:6417cccad133 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 6c9d530aa653101e9e21804393ec11f38cddf027-dirty
author | ebi-gxa |
---|---|
date | Thu, 16 Feb 2023 13:29:23 +0000 |
parents | fcaa9048cdaf |
children | f776e3ed3c03 |
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--- a/scanpy-neighbours.xml Thu Oct 28 09:58:45 2021 +0000 +++ b/scanpy-neighbours.xml Thu Feb 16 13:29:23 2023 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> +<tool id="scanpy_compute_graph" name="Scanpy ComputeGraph" version="@TOOL_VERSION@+galaxy9" profile="@PROFILE@"> <description>to derive kNN graph</description> <macros> <import>scanpy_macros2.xml</import> @@ -132,7 +132,7 @@ The neighbor search efficiency of this heavily relies on UMAP (McInnes et al, 2018), which also provides a method for estimating connectivities of data points - -the connectivity of the manifold (`method=='umap'`). If `method=='diffmap'`, +the connectivity of the manifold (`method=='umap'`). If `method=='Gaussian'`, connectivities are computed according to Coifman et al (2005), in the adaption of Haghverdi et al (2016).