Mercurial > repos > ebi-gxa > scanpy_filter_cells
comparison scanpy-filter-cells.xml @ 3:8e48fa9618c1 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit d13a0a5fceabe51e1a6fe763767b963623aa295a
| author | ebi-gxa |
|---|---|
| date | Mon, 28 Oct 2019 05:27:24 -0400 |
| parents | c23d0ff783d4 |
| children | 1b0fdf08a454 |
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| 2:c23d0ff783d4 | 3:8e48fa9618c1 |
|---|---|
| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy0"> | 2 <tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy1"> |
| 3 <description>based on counts and numbers of genes expressed</description> | 3 <description>based on counts and numbers of genes expressed</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 23 #set subs = ' '.join(['--subset c:{name} {subset}'.format(**$s) for $s in $subsets]) | 23 #set subs = ' '.join(['--subset c:{name} {subset}'.format(**$s) for $s in $subsets]) |
| 24 ${subs} | 24 ${subs} |
| 25 #end if | 25 #end if |
| 26 @INPUT_OPTS@ | 26 @INPUT_OPTS@ |
| 27 @OUTPUT_OPTS@ | 27 @OUTPUT_OPTS@ |
| 28 @EXPORT_MTX_OPTS@ | |
| 28 ]]></command> | 29 ]]></command> |
| 29 | 30 |
| 30 <inputs> | 31 <inputs> |
| 31 <expand macro="input_object_params"/> | 32 <expand macro="input_object_params"/> |
| 32 <expand macro="output_object_params"/> | 33 <expand macro="output_object_params"/> |