Mercurial > repos > ebi-gxa > scanpy_filter_cells

comparison scanpy-filter-cells.xml @ 28:bf1e0bdec1db draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:55 +0000
parents 356fa6c27341
children
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27:356fa6c27341 28:bf1e0bdec1db
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@" > 2 <tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@" >
3 <description>based on counts and numbers of genes expressed</description> 3 <description>based on counts and numbers of genes expressed</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
86 <repeat name="parameters"> 86 <repeat name="parameters">
87 <param name="name" value="n_counts"/> 87 <param name="name" value="n_counts"/>
88 <param name="min" value="0"/> 88 <param name="min" value="0"/>
89 <param name="max" value="1e9"/> 89 <param name="max" value="1e9"/>
90 </repeat> 90 </repeat>
91 <output name="output_h5" file="filter_cells.h5" ftype="h5" compare="sim_size"/> 91 <output name="output_h5" ftype="h5">
92 <assert_contents>
93 <has_h5_keys keys="obs/n_genes_by_counts"/>
94 </assert_contents>
95 </output>
92 </test> 96 </test>
93 </tests> 97 </tests>
94 98
95 <help><![CDATA[ 99 <help><![CDATA[
96 =================================================================== 100 ===================================================================