changeset 3:8e48fa9618c1 draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit d13a0a5fceabe51e1a6fe763767b963623aa295a
author ebi-gxa
date Mon, 28 Oct 2019 05:27:24 -0400
parents c23d0ff783d4
children 1b0fdf08a454
files dataset_102795.dat dataset_102795.dat.zip input.h5 input.h5.zip scanpy-filter-cells.xml scanpy_macros2.xml
diffstat 6 files changed, 3 insertions(+), 32522 deletions(-) [+]
line wrap: on
line diff
--- a/dataset_102795.dat	Fri Oct 25 08:25:27 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,32520 +0,0 @@
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Binary file dataset_102795.dat.zip has changed
Binary file input.h5 has changed
Binary file input.h5.zip has changed
--- a/scanpy-filter-cells.xml	Fri Oct 25 08:25:27 2019 -0400
+++ b/scanpy-filter-cells.xml	Mon Oct 28 05:27:24 2019 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy0">
+<tool id="scanpy_filter_cells" name="Scanpy FilterCells" version="@TOOL_VERSION@+galaxy1">
   <description>based on counts and numbers of genes expressed</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -25,6 +25,7 @@
 #end if
     @INPUT_OPTS@
     @OUTPUT_OPTS@
+    @EXPORT_MTX_OPTS@
     ]]></command>
 
   <inputs>
--- a/scanpy_macros2.xml	Fri Oct 25 08:25:27 2019 -0400
+++ b/scanpy_macros2.xml	Mon Oct 28 05:27:24 2019 -0400
@@ -79,7 +79,7 @@
   </xml>
 
   <xml name="export_mtx_params">
-    <param name="export_mtx" argument="--export-mtx" type="boolean" truevalue="--export-mtx ./" falsevalue="" checked="false" label="Save normalised data to 10x mtx format" help="If enabled, it will generate in addition to the main output in Loom or AnnData an export in 10x format of the normalised data."/>
+    <param name="export_mtx" argument="--export-mtx" type="boolean" truevalue="--export-mtx ./" falsevalue="" checked="false" label="Save to 10x mtx format" help="If enabled, it will generate in addition to the main output in Loom or AnnData an export in 10x format."/>
   </xml>
 
   <xml name="export_mtx_outputs">