Mercurial > repos > ebi-gxa > scanpy_filter_genes

comparison scanpy-filter-genes.xml @ 2:a797a810d7e9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 21b38b449c453762966dfbe55ec3bf7d39377c86
author ebi-gxa
date Tue, 22 Oct 2019 08:01:01 -0400
parents 7aebd6265a97
children 77fbe74247c2
comparison
equal deleted inserted replaced
1:7aebd6265a97 2:a797a810d7e9
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy1"> 2 <tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy2">
3 <description>based on counts and numbers of cells expressed</description> 3 <description>based on counts and numbers of cells expressed</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
15 #if $categories 15 #if $categories
16 #set cats = ' '.join(['--category {name} {values}'.format(**$c) for $c in $categories]) 16 #set cats = ' '.join(['--category {name} {values}'.format(**$c) for $c in $categories])
17 ${cats} 17 ${cats}
18 #end if 18 #end if
19 #if $subsets 19 #if $subsets
20 #set subs = ' '.join(['--subsets {name} {subset}'.format(**$s) for $c in $subsets]) 20 #set subs = ' '.join(['--subsets {name} {subset}'.format(**$s) for $s in $subsets])
21 ${subs} 21 ${subs}
22 #end if 22 #end if
23 @INPUT_OPTS@ 23 @INPUT_OPTS@
24 @OUTPUT_OPTS@ 24 @OUTPUT_OPTS@
25 ]]></command> 25 ]]></command>