Mercurial > repos > ebi-gxa > scanpy_filter_genes

comparison scanpy-filter-genes.xml @ 21:d82d999fa716 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ebe77c8718ec65277f4dc0d71fa5f4c5677df62d-dirty"
author ebi-gxa
date Wed, 05 May 2021 12:09:03 +0000
parents fc5b3e76131b
children 474a69c47184
comparison
equal deleted inserted replaced
20:da2808112bb4 21:d82d999fa716
26 #if $subsets 26 #if $subsets
27 #set subs = ' '.join(["--subset 'g:{name}' '{subset}'".format(**$s) for $s in $subsets]) 27 #set subs = ' '.join(["--subset 'g:{name}' '{subset}'".format(**$s) for $s in $subsets])
28 ${subs} 28 ${subs}
29 #end if 29 #end if
30 $force_recalc 30 $force_recalc
31 @SAVE_MATRIX_OPTS@
31 @INPUT_OPTS@ 32 @INPUT_OPTS@
32 @OUTPUT_OPTS@ 33 @OUTPUT_OPTS@
33 @EXPORT_MTX_OPTS@ 34 @EXPORT_MTX_OPTS@
34 ]]></command> 35 ]]></command>
35 36
55 <repeat name="subsets" title="Subsets to select genes to keep" min="0"> 56 <repeat name="subsets" title="Subsets to select genes to keep" min="0">
56 <param name="name" type="text" value="" label="Name of the categorical variable to filter on"/> 57 <param name="name" type="text" value="" label="Name of the categorical variable to filter on"/>
57 <param name="subset" type="data" format="tabular" label="List of values to keep" help="A one-column headerless text file is required"/> 58 <param name="subset" type="data" format="tabular" label="List of values to keep" help="A one-column headerless text file is required"/>
58 </repeat> 59 </repeat>
59 <param name="force_recalc" label="Force recalculation of QC vars" type="boolean" truevalue="--force-recalc" falsevalue="" help="If set, it will recalculate pcts and other existing QC vars, overwriting existing ones."/> 60 <param name="force_recalc" label="Force recalculation of QC vars" type="boolean" truevalue="--force-recalc" falsevalue="" help="If set, it will recalculate pcts and other existing QC vars, overwriting existing ones."/>
61 <expand macro="save_matrix_params"/>
60 <expand macro="export_mtx_params"/> 62 <expand macro="export_mtx_params"/>
61 </inputs> 63 </inputs>
62 64
63 <outputs> 65 <outputs>
64 <expand macro="output_data_obj" description="Filtered cells"/> 66 <expand macro="output_data_obj" description="Filtered cells"/>