Mercurial > repos > ebi-gxa > scanpy_filter_genes

comparison scanpy-filter-genes.xml @ 29:cc64914b0cf4 draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:23 +0000
parents 9a36525a8425
children
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28:9a36525a8425 29:cc64914b0cf4
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_filter_genes" name="Scanpy FilterGenes" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>based on counts and numbers of cells expressed</description> 3 <description>based on counts and numbers of cells expressed</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
80 <repeat name="parameters"> 80 <repeat name="parameters">
81 <param name="name" value="n_counts"/> 81 <param name="name" value="n_counts"/>
82 <param name="min" value="0"/> 82 <param name="min" value="0"/>
83 <param name="max" value="1e9"/> 83 <param name="max" value="1e9"/>
84 </repeat> 84 </repeat>
85 <output name="output_h5" file="filter_genes.h5" ftype="h5" compare="sim_size"/> 85 <output name="output_h5" ftype="h5">
86 <assert_contents>
87 <has_h5_keys keys="obs/n_genes_by_counts" />
88 </assert_contents>
89 </output>
86 </test> 90 </test>
87 </tests> 91 </tests>
88 92
89 <help><![CDATA[ 93 <help><![CDATA[
90 ===================================================================== 94 =====================================================================