Mercurial > repos > ebi-gxa > scanpy_find_cluster

comparison scanpy-find-cluster.xml @ 11:5a62843a2b9f draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c98a1caf2a3eed8b1571dae2bf7a794adecdf406"
author ebi-gxa
date Wed, 08 Apr 2020 05:07:07 -0400
parents e4006a341f74
children c46750e2e4a4
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10:2704d80b7e91 11:5a62843a2b9f
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@"> 2 <tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy11" profile="@PROFILE@">
3 <description>based on community detection on KNN graph</description> 3 <description>based on community detection on KNN graph</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
50 <when value="true"/> 50 <when value="true"/>
51 <when value="false"> 51 <when value="false">
52 <param name="use_graph" argument="--use-graph" value="neighbors" type="text" 52 <param name="use_graph" argument="--use-graph" value="neighbors" type="text"
53 label="Name of the slot that holds the KNN graph"/> 53 label="Name of the slot that holds the KNN graph"/>
54 <param name="key_added" argument="--key-added" type="text" optional="true" 54 <param name="key_added" argument="--key-added" type="text" optional="true"
55 label="Additional suffix to the name of the slot to save the calculated trajectory"/> 55 label="Additional suffix to the name of the slot to save the calculated clustering"/>
56 56
57 <param name="resolution" argument="--resolution" type="float" min="0.0" value="1.0" 57 <param name="resolution" argument="--resolution" type="float" min="0.0" value="1.0"
58 label="Resolution, high value for more and smaller clusters"/> 58 label="Resolution, high value for more and smaller clusters"/>
59 <param name="resolution_file" argument="--resolution" type="data" format="txt,tsv" optional="true" 59 <param name="resolution_file" argument="--resolution" type="data" format="txt,tsv" optional="true"
60 label="File with resolution, use with parameter iterator. Overrides the resolution setting"/> 60 label="File with resolution, use with parameter iterator. Overrides the resolution setting"/>