Mercurial > repos > ebi-gxa > scanpy_find_cluster

comparison scanpy-find-cluster.xml @ 31:36735850e461 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:39 +0000
parents d19920419c78
children
comparison
equal deleted inserted replaced
30:d19920419c78 31:36735850e461
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>based on community detection on KNN graph</description> 3 <description>based on community detection on KNN graph</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
95 <param name="input_format" value="anndata"/> 95 <param name="input_format" value="anndata"/>
96 <param name="output_format" value="anndata"/> 96 <param name="output_format" value="anndata"/>
97 <param name="default" value="false"/> 97 <param name="default" value="false"/>
98 <param name="resolution_file" value="resolution.txt"/> 98 <param name="resolution_file" value="resolution.txt"/>
99 <param name="random_seed" value="0"/> 99 <param name="random_seed" value="0"/>
100 <output name="output_h5" file="find_cluster.h5" ftype="h5" compare="sim_size"/> 100 <output name="output_h5" ftype="h5">
101 <assert_contents>
102 <has_h5_keys keys="obs/louvain"/>
103 </assert_contents>
104 </output>
101 <output name="output_txt" file="find_cluster.tsv" ftype="tsv"/> 105 <output name="output_txt" file="find_cluster.tsv" ftype="tsv"/>
102 </test> 106 </test>
103 <test> 107 <test>
104 <param name="input_obj_file" value="compute_graph.h5"/> 108 <param name="input_obj_file" value="compute_graph.h5"/>
105 <param name="input_format" value="anndata"/> 109 <param name="input_format" value="anndata"/>
106 <param name="output_format" value="anndata"/> 110 <param name="output_format" value="anndata"/>
107 <param name="default" value="false"/> 111 <param name="default" value="false"/>
108 <param name="resolution" value="1.0"/> 112 <param name="resolution" value="1.0"/>
109 <param name="random_seed" value="0"/> 113 <param name="random_seed" value="0"/>
110 <output name="output_h5" file="find_cluster.h5" ftype="h5" compare="sim_size"/> 114 <output name="output_h5" ftype="h5">
115 <assert_contents>
116 <has_h5_keys keys="obs/louvain"/>
117 </assert_contents>
118 </output>
111 <output name="output_txt" file="find_cluster.tsv" ftype="tsv"/> 119 <output name="output_txt" file="find_cluster.tsv" ftype="tsv"/>
112 </test> 120 </test>
113 <test> 121 <test>
114 <param name="input_obj_file" value="compute_graph.h5"/> 122 <param name="input_obj_file" value="compute_graph.h5"/>
115 <param name="input_format" value="anndata"/> 123 <param name="input_format" value="anndata"/>
117 <param name="default" value="false"/> 125 <param name="default" value="false"/>
118 <param name="method" value="louvain"/> 126 <param name="method" value="louvain"/>
119 <param name="resolution" value="1.0"/> 127 <param name="resolution" value="1.0"/>
120 <param name="key_added" value="METHOD_RESOLUTION"/> 128 <param name="key_added" value="METHOD_RESOLUTION"/>
121 <param name="random_seed" value="0"/> 129 <param name="random_seed" value="0"/>
122 <output name="output_h5" file="louvain_1.0" ftype="h5" compare="sim_size"/> 130 <output name="output_h5" ftype="h5">
131 <assert_contents>
132 <has_h5_keys keys="obs/louvain_1.0"/>
133 </assert_contents>
134 </output>
123 <output name="output_txt" file="louvain_1.0.tsv" ftype="tsv"/> 135 <output name="output_txt" file="louvain_1.0.tsv" ftype="tsv"/>
124 </test> 136 </test>
125 </tests> 137 </tests>
126 138
127 <help><![CDATA[ 139 <help><![CDATA[