Mercurial > repos > ebi-gxa > scanpy_find_cluster

diff scanpy-find-cluster.xml @ 18:15e8a4c60418 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit fda35ff3ea8609c4bb5e1fd9e58ba70cd5b5a997-dirty"
author ebi-gxa
date Wed, 30 Sep 2020 11:12:27 +0000
parents b45b85d5c7ec
children b531acda966c
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line diff
--- a/scanpy-find-cluster.xml	Tue Sep 29 14:07:52 2020 +0000
+++ b/scanpy-find-cluster.xml	Wed Sep 30 11:12:27 2020 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
+<tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@">
   <description>based on community detection on KNN graph</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -112,6 +112,19 @@
       <output name="output_h5" file="find_cluster.h5" ftype="h5" compare="sim_size"/>
       <output name="output_txt" file="find_cluster.tsv" ftype="tsv"/>
     </test>
+    <test>
+      <param name="input_obj_file" value="compute_graph.h5"/>
+      <param name="input_format" value="anndata"/>
+      <param name="output_format" value="anndata"/>
+      <param name="output_txt" value="true"/>
+      <param name="default" value="false"/>
+      <param name="method" value="louvain"/>
+      <param name="resolution" value="1.0"/>
+      <param name="key_added" value="METHOD_RESOLUTION"/>
+      <param name="random_seed" value="0"/>
+      <output name="output_h5" file="louvain_1.0" ftype="h5" compare="sim_size"/>
+      <output name="output_txt" file="louvain_1.0.tsv" ftype="tsv"/>
+    </test>
   </tests>
 
   <help><![CDATA[