Mercurial > repos > ebi-gxa > scanpy_find_cluster

diff scanpy-find-cluster.xml @ 29:2ccd9f9e2cd0 draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 6c9d530aa653101e9e21804393ec11f38cddf027-dirty
author ebi-gxa
date Thu, 16 Feb 2023 13:28:44 +0000
parents 1e820072e8f1
children d19920419c78
line wrap: on
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--- a/scanpy-find-cluster.xml	Thu Oct 28 09:56:22 2021 +0000
+++ b/scanpy-find-cluster.xml	Thu Feb 16 13:28:44 2023 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+<tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy9" profile="@PROFILE@">
   <description>based on community detection on KNN graph</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -94,7 +94,6 @@
       <param name="input_obj_file" value="compute_graph.h5"/>
       <param name="input_format" value="anndata"/>
       <param name="output_format" value="anndata"/>
-      <param name="output_txt" value="true"/>
       <param name="default" value="false"/>
       <param name="resolution_file" value="resolution.txt"/>
       <param name="random_seed" value="0"/>
@@ -105,7 +104,6 @@
       <param name="input_obj_file" value="compute_graph.h5"/>
       <param name="input_format" value="anndata"/>
       <param name="output_format" value="anndata"/>
-      <param name="output_txt" value="true"/>
       <param name="default" value="false"/>
       <param name="resolution" value="1.0"/>
       <param name="random_seed" value="0"/>
@@ -116,7 +114,6 @@
       <param name="input_obj_file" value="compute_graph.h5"/>
       <param name="input_format" value="anndata"/>
       <param name="output_format" value="anndata"/>
-      <param name="output_txt" value="true"/>
       <param name="default" value="false"/>
       <param name="method" value="louvain"/>
       <param name="resolution" value="1.0"/>