Mercurial > repos > ebi-gxa > scanpy_find_cluster
diff scanpy-find-cluster.xml @ 19:b531acda966c draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0fc0cc467014e750dbaa6c47b528b25af0bdc0c4-dirty"
| author | ebi-gxa |
|---|---|
| date | Wed, 07 Oct 2020 16:02:21 +0000 |
| parents | 15e8a4c60418 |
| children | 1e820072e8f1 |
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--- a/scanpy-find-cluster.xml Wed Sep 30 11:12:27 2020 +0000 +++ b/scanpy-find-cluster.xml Wed Oct 07 16:02:21 2020 +0000 @@ -1,23 +1,23 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@"> +<tool id="scanpy_find_cluster" name="Scanpy FindCluster" version="@TOOL_VERSION@+galaxy4" profile="@PROFILE@"> <description>based on community detection on KNN graph</description> <macros> <import>scanpy_macros2.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ -#if $settings.resolution_file - #set f = open($settings.resolution_file.__str__) - #set resolution = f.read().strip() - #silent f.close -#elif $settings.resolution - #set resolution = $settings.resolution.__str__.strip() -#end if - ln -s '${input_obj_file}' input.h5 && PYTHONIOENCODING=utf-8 scanpy-find-cluster ${method} #if $settings.default == "false" + #if $settings.resolution_file + #set f = open($settings.resolution_file.__str__) + #set resolution = f.read().strip() + #silent f.close + #elif $settings.resolution + #set resolution = $settings.resolution.__str__.strip() + #end if + --neighbors-key '${settings.neighbors_key}' #if $settings.key_added #set key_added = $settings.key_added.replace('METHOD', $method.__str__)