# HG changeset patch
# User ebi-gxa
# Date 1554304152 14400
# Node ID ce27ae8a36cd255649442ec0f1f481e63fd5a5a5
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9bf9a6e46a330890be932f60d1d996dd166426c4
diff -r 000000000000 -r ce27ae8a36cd scanpy-find-cluster.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/scanpy-find-cluster.xml Wed Apr 03 11:09:12 2019 -0400
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+ based on community detection on KNN graph
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+ scanpy_macros.xml
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+ output_cluster
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+ 10.1088/1742-5468/2008/10/P10008
+ 10.1016/j.cell.2015.05.047
+ 10.5281/zenodo.35117
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diff -r 000000000000 -r ce27ae8a36cd scanpy_macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/scanpy_macros.xml Wed Apr 03 11:09:12 2019 -0400
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+ 1.3.2
+ More information can be found at https://scanpy.readthedocs.io
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+#if $do_plotting.plot
+ -P output.png
+ --projectio $do_plotting.projection
+ --components $do_plotting.components
+ #if $do_plotting.color_by
+ --color-by $do_plotting.color_by
+ #end if
+ #if $do_plotting.groups
+ --group $do_plotting.groups
+ #end if
+ #if $do_plotting.use_raw
+ --use-raw
+ #end if
+ #if $do_plotting.palette
+ --palette $do_plotting.palette
+ #end if
+ #if $do_plotting.edges
+ --edges
+ #end if
+ #if $do_plotting.arrows
+ --arrows
+ #end if
+ #if not $do_plotting.sort_order
+ --no-sort-order
+ #end if
+ #if $do_plotting.frameoff
+ --frameoff
+ #end if
+#end if
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+ scanpy-scripts
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+ ${export_mtx}
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+ 10.1186/s13059-017-1382-0
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+ @misc{githubscanpy-scripts,
+ author = {Ni Huang, EBI Gene Expression Team},
+ year = {2018},
+ title = {Scanpy-scripts: command line interface for Scanpy},
+ publisher = {GitHub},
+ journal = {GitHub repository},
+ url = {https://github.com/ebi-gene-expression-group/scanpy-scripts},
+ }
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+ export_mtx
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+ export_mtx
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+ export_mtx
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