Mercurial > repos > ebi-gxa > scanpy_find_markers

comparison scanpy-find-markers.xml @ 20:615a46c220f0 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit dc04b063913e5d8ae360b51b62adde47bc1ddac7-dirty"
author ebi-gxa
date Mon, 22 Mar 2021 14:37:35 +0000
parents bfdca1eb4548
children a6a896082cd7
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19:9fe7e2da8fe6 20:615a46c220f0
31 #if $settings.groups 31 #if $settings.groups
32 --groups '${settings.groups}' 32 --groups '${settings.groups}'
33 #end if 33 #end if
34 --reference '${settings.reference}' 34 --reference '${settings.reference}'
35 --filter-params 'min_in_group_fraction:${settings.min_in_group_fraction},max_out_group_fraction:${settings.max_out_group_fraction},min_fold_change:${settings.min_fold_change}' 35 --filter-params 'min_in_group_fraction:${settings.min_in_group_fraction},max_out_group_fraction:${settings.max_out_group_fraction},min_fold_change:${settings.min_fold_change}'
36 $settings.pts $settings.tie_correct
36 #end if 37 #end if
37 $settings.pts $settings.tie_correct
38 @INPUT_OPTS@ 38 @INPUT_OPTS@
39 @OUTPUT_OPTS@ 39 @OUTPUT_OPTS@
40 ]]></command> 40 ]]></command>
41 41
42 <inputs> 42 <inputs>