Mercurial > repos > ebi-gxa > scanpy_find_markers

diff scanpy-find-markers.xml @ 16:1670af5eee46 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0fc0cc467014e750dbaa6c47b528b25af0bdc0c4-dirty"
author ebi-gxa
date Wed, 07 Oct 2020 16:06:38 +0000
parents cc776860fae1
children f04dd4e5b6a7
line wrap: on
line diff
--- a/scanpy-find-markers.xml	Wed Sep 30 11:16:08 2020 +0000
+++ b/scanpy-find-markers.xml	Wed Oct 07 16:06:38 2020 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
   <description>to find differentially expressed genes between groups</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -14,11 +14,11 @@
     --n-genes '${n_genes}'
 #set groupby = $groupby.replace('INPUT_OBJ', $input_obj_file.__getattr__('name'))
     --groupby '${groupby}'
-#if $settings.key_added
-    #set key_added = $settings.key_added.replace('GROUPBY', $groupby.__str__)
-    --key-added '${key_added}'
-#end if
 #if $settings.default == "false"
+    #if $settings.key_added
+        #set key_added = $settings.key_added.replace('GROUPBY', $groupby.__str__)
+        --key-added '${key_added}'
+    #end if
     --method '${settings.method}'
     ${settings.use_raw}
     ${settings.rankby_abs}