Mercurial > repos > ebi-gxa > scanpy_find_markers

diff scanpy-find-markers.xml @ 5:74100c9351bc draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:36:58 -0500
parents 71668dd2d47b
children b5e8157dc20f
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--- a/scanpy-find-markers.xml	Wed Nov 20 05:11:55 2019 -0500
+++ b/scanpy-find-markers.xml	Mon Nov 25 14:36:58 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy1">
+<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy6">
   <description>to find differentially expressed genes between groups</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -60,7 +60,7 @@
   </inputs>
 
   <outputs>
-    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: Marker object"/>
+    <expand macro="output_data_obj" description="Marker genes"/>
     <data name="output_csv" format="csv" from_work_dir="output.csv" label="${tool.name} on ${on_string}: Marker table">
       <filter>output_markers</filter>
     </data>