Mercurial > repos > ebi-gxa > scanpy_find_markers
diff scanpy-find-markers.xml @ 32:d8f5224005bb draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
| author | ebi-gxa |
|---|---|
| date | Tue, 27 Feb 2024 16:42:50 +0000 |
| parents | f0f78d29130f |
| children |
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--- a/scanpy-find-markers.xml Fri Oct 13 14:07:40 2023 +0000 +++ b/scanpy-find-markers.xml Tue Feb 27 16:42:50 2024 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> +<tool id="scanpy_find_markers" name="Scanpy FindMarkers" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> <description>to find differentially expressed genes between groups</description> <macros> <import>scanpy_macros2.xml</import> @@ -113,8 +113,12 @@ <param name="key_added" value="GROUPBY_marker"/> <param name="method" value="t-test_overestim_var"/> <param name="rankby_abs" value="false"/> - <output name="output_h5" file="find_markers.h5" ftype="h5" compare="sim_size"/> - <output name="output_tsv" file="diffexp.tsv" ftype="tabular" compare="sim_size"/> + <output name="output_h5" ftype="h5"> + <assert_contents> + <has_h5_keys keys="uns/louvain_1.0_marker"/> + </assert_contents> + </output> + <output name="output_tsv" file="diffexp.tsv" ftype="tabular" compare="sim_size" delta_frac="0.1"/> </test> <test> <param name="input_obj_file" value="louvain_1.0"/> @@ -127,7 +131,7 @@ <param name="key_added" value="GROUPBY_marker"/> <param name="method" value="t-test_overestim_var"/> <param name="rankby_abs" value="false"/> - <output name="output_tsv" file="diffexp.tsv" ftype="tabular" compare="sim_size"/> + <output name="output_tsv" file="diffexp.tsv" ftype="tabular" compare="sim_size" delta_frac="0.1"/> </test> <test> <param name="input_obj_file" value="mnn.h5"/>