Mercurial > repos > ebi-gxa > scanpy_find_variable_genes

comparison scanpy-find-variable-genes.xml @ 5:cb007db0857d draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:41:37 -0500
parents b089f4a55e6b
children de331b5828dc
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4:258e13397a8a 5:cb007db0857d
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_find_variable_genes" name="Scanpy FindVariableGenes" version="@TOOL_VERSION@+galaxy0"> 2 <tool id="scanpy_find_variable_genes" name="Scanpy FindVariableGenes" version="@TOOL_VERSION@+galaxy6">
3 <description>based on normalised dispersion of expression</description> 3 <description>based on normalised dispersion of expression</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
48 <param name="filter" argument="--subset" type="boolean" truevalue="--subset" falsevalue="" checked="false" 48 <param name="filter" argument="--subset" type="boolean" truevalue="--subset" falsevalue="" checked="false"
49 label="Remove genes not marked as highly variable"/> 49 label="Remove genes not marked as highly variable"/>
50 </inputs> 50 </inputs>
51 51
52 <outputs> 52 <outputs>
53 <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: Variable genes"/> 53 <expand macro="output_data_obj" description="Variable genes"/>
54 </outputs> 54 </outputs>
55 55
56 <tests> 56 <tests>
57 <test> 57 <test>
58 <param name="input_obj_file" value="normalise_data.h5"/> 58 <param name="input_obj_file" value="normalise_data.h5"/>