Mercurial > repos > ebi-gxa > scanpy_integrate_bbknn

comparison scanpy-integrate-bbknn.xml @ 15:c9da9192eee5 draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:00 +0000
parents 12fc7e093094
children
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14:12fc7e093094 15:c9da9192eee5
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_integrate_bbknn" name="Scanpy BBKNN" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_integrate_bbknn" name="Scanpy BBKNN" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>batch-balanced K-nearest neighbours</description> 3 <description>batch-balanced K-nearest neighbours</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
122 <test> 122 <test>
123 <param name="input_obj_file" value="find_cluster.h5"/> 123 <param name="input_obj_file" value="find_cluster.h5"/>
124 <param name="input_format" value="anndata"/> 124 <param name="input_format" value="anndata"/>
125 <param name="output_format" value="anndata"/> 125 <param name="output_format" value="anndata"/>
126 <param name="batch_key" value="louvain"/> 126 <param name="batch_key" value="louvain"/>
127 <output name="output_h5" file="bbknn.h5" ftype="h5" compare="sim_size"/> 127 <output name="output_h5" file="bbknn.h5" ftype="h5" compare="sim_size" delta_frac="0.1"/>
128 </test> 128 </test>
129 <test> 129 <test>
130 <param name="input_obj_file" value="find_cluster.h5"/> 130 <param name="input_obj_file" value="find_cluster.h5"/>
131 <param name="input_format" value="anndata"/> 131 <param name="input_format" value="anndata"/>
132 <param name="output_format" value="anndata"/> 132 <param name="output_format" value="anndata"/>
133 <output name="output_h5" file="bbknn_copy.h5" ftype="h5" compare="sim_size"/> 133 <output name="output_h5" file="bbknn_copy.h5" ftype="h5" compare="sim_size" delta_frac="0.1"/>
134 </test> 134 </test>
135 </tests> 135 </tests>
136 136
137 <help><![CDATA[ 137 <help><![CDATA[
138 .. class:: infomark 138 .. class:: infomark