Mercurial > repos > ebi-gxa > scanpy_integrate_mnn
comparison scanpy_macros2.xml @ 10:9724e5ffaa1f draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9748fb7ca203206ecac97461f60ce75890d00fa4-dirty"
author | ebi-gxa |
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date | Fri, 15 Oct 2021 15:04:21 +0000 |
parents | 65c9c962b133 |
children | 94697510d55f |
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9:65c9c962b133 | 10:9724e5ffaa1f |
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39 <token name="@SAVE_MATRIX_OPTS@"> | 39 <token name="@SAVE_MATRIX_OPTS@"> |
40 #if $save_raw | 40 #if $save_raw |
41 --save-raw | 41 --save-raw |
42 #end if | 42 #end if |
43 #if $save_layer | 43 #if $save_layer |
44 --save-layer ${settings.save_layer} | 44 --save-layer ${save_layer} |
45 #end if | 45 #end if |
46 </token> | 46 </token> |
47 <token name="@OUTPUT_OPTS@"> | 47 <token name="@OUTPUT_OPTS@"> |
48 #if str($output_format).startswith('anndata') | 48 #if str($output_format).startswith('anndata') |
49 --show-obj stdout --output-format anndata output.h5 | 49 --show-obj stdout --output-format anndata output.h5 |