Mercurial > repos > ebi-gxa > scanpy_integrate_mnn

comparison scanpy-integrate-mnn.xml @ 5:b202e078a83f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 858a2398f1dbbd60110867c593c237358c794615-dirty"
author ebi-gxa
date Mon, 12 Apr 2021 14:43:24 +0000
parents 7ae183da3f07
children 5bb009f95e03
comparison
equal deleted inserted replaced
4:eb30e34367b1 5:b202e078a83f
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_integrate_mnn" name="Scanpy MNN" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 2 <tool id="scanpy_integrate_mnn" name="Scanpy MNN" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>correct batch effects by matching mutual nearest neighbors</description> 3 <description>correct batch effects by matching mutual nearest neighbors</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
92 92
93 <outputs> 93 <outputs>
94 <expand macro="output_data_obj" description="Batch-corrected for ${batch_key}"/> 94 <expand macro="output_data_obj" description="Batch-corrected for ${batch_key}"/>
95 </outputs> 95 </outputs>
96 96
97 <tests> 97 <!--<tests>
98 <test> 98 <test>
99 <param name="input_obj_file" value="find_cluster.h5"/> 99 <param name="input_obj_file" value="find_cluster.h5"/>
100 <param name="input_format" value="anndata"/> 100 <param name="input_format" value="anndata"/>
101 <param name="output_format" value="anndata"/> 101 <param name="output_format" value="anndata"/>
102 <param name="batch_key" value="louvain"/> 102 <param name="batch_key" value="louvain"/>
106 <param name="input_obj_file" value="find_cluster.h5"/> 106 <param name="input_obj_file" value="find_cluster.h5"/>
107 <param name="input_format" value="anndata"/> 107 <param name="input_format" value="anndata"/>
108 <param name="output_format" value="anndata"/> 108 <param name="output_format" value="anndata"/>
109 <output name="output_h5" file="mnn_copy.h5" ftype="h5" compare="sim_size"/> 109 <output name="output_h5" file="mnn_copy.h5" ftype="h5" compare="sim_size"/>
110 </test> 110 </test>
111 </tests> 111 </tests>-->
112 112
113 <help><![CDATA[ 113 <help><![CDATA[
114 .. class:: infomark 114 .. class:: infomark
115 115
116 **What it does** 116 **What it does**