Mercurial > repos > ebi-gxa > scanpy_normalise_data

comparison scanpy_macros2.xml @ 23:f6a781314ca8 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9748fb7ca203206ecac97461f60ce75890d00fa4-dirty"
author ebi-gxa
date Fri, 15 Oct 2021 15:05:41 +0000
parents 1e9616772e16
children 439f7f939d46
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22:1e9616772e16 23:f6a781314ca8
39 <token name="@SAVE_MATRIX_OPTS@"> 39 <token name="@SAVE_MATRIX_OPTS@">
40 #if $save_raw 40 #if $save_raw
41 --save-raw 41 --save-raw
42 #end if 42 #end if
43 #if $save_layer 43 #if $save_layer
44 --save-layer ${settings.save_layer} 44 --save-layer ${save_layer}
45 #end if 45 #end if
46 </token> 46 </token>
47 <token name="@OUTPUT_OPTS@"> 47 <token name="@OUTPUT_OPTS@">
48 #if str($output_format).startswith('anndata') 48 #if str($output_format).startswith('anndata')
49 --show-obj stdout --output-format anndata output.h5 49 --show-obj stdout --output-format anndata output.h5