Mercurial > repos > ebi-gxa > scanpy_normalise_data

comparison scanpy-normalise-data.xml @ 27:3027cb62adbd draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:20 +0000
parents 4bbb2179521c
children
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26:4bbb2179521c 27:3027cb62adbd
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_normalise_data" name="Scanpy NormaliseData" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_normalise_data" name="Scanpy NormaliseData" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>to make all cells having the same total expression</description> 3 <description>to make all cells having the same total expression</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
73 <param name="input_obj_file" value="filter_genes.h5"/> 73 <param name="input_obj_file" value="filter_genes.h5"/>
74 <param name="input_format" value="anndata"/> 74 <param name="input_format" value="anndata"/>
75 <param name="output_format" value="anndata"/> 75 <param name="output_format" value="anndata"/>
76 <param name="scale_factor" value="1e4"/> 76 <param name="scale_factor" value="1e4"/>
77 <param name="save_raw" value="false"/> 77 <param name="save_raw" value="false"/>
78 <output name="output_h5" file="normalise_data.h5" ftype="h5" compare="sim_size"/> 78 <output name="output_h5" ftype="h5">
79 <assert_contents>
80 <has_h5_keys keys="var/n_cells_by_counts"/>
81 </assert_contents>
82 </output>
79 </test> 83 </test>
80 </tests> 84 </tests>
81 85
82 <help><![CDATA[ 86 <help><![CDATA[
83 ============================================================= 87 =============================================================