Mercurial > repos > ebi-gxa > scanpy_plot_embed
comparison scanpy-plot-embedding.xml @ 26:7d5c97823f8b draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
| author | ebi-gxa |
|---|---|
| date | Tue, 27 Feb 2024 16:42:32 +0000 |
| parents | bfb4d298d75f |
| children |
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| 25:bfb4d298d75f | 26:7d5c97823f8b |
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| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_plot_embed" name="Scanpy PlotEmbed" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> | 2 <tool id="scanpy_plot_embed" name="Scanpy PlotEmbed" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
| 3 <description>visualise cell embeddings</description> | 3 <description>visualise cell embeddings</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 88 <param name="input_obj_file" value="find_cluster.h5"/> | 88 <param name="input_obj_file" value="find_cluster.h5"/> |
| 89 <param name="input_format" value="anndata"/> | 89 <param name="input_format" value="anndata"/> |
| 90 <param name="basis" value="X_pca"/> | 90 <param name="basis" value="X_pca"/> |
| 91 <param name="color_by" value="louvain"/> | 91 <param name="color_by" value="louvain"/> |
| 92 <param name="use_raw" value="false"/> | 92 <param name="use_raw" value="false"/> |
| 93 <output name="output_png" file="plot_embed.png" ftype="png" compare="sim_size"/> | 93 <output name="output_png" file="plot_embed.png" ftype="png" compare="sim_size" delta_frac="0.1"/> |
| 94 </test> | 94 </test> |
| 95 </tests> | 95 </tests> |
| 96 | 96 |
| 97 <help><![CDATA[ | 97 <help><![CDATA[ |
| 98 ============================================================= | 98 ============================================================= |