Mercurial > repos > ebi-gxa > scanpy_plot_trajectory

diff scanpy-plot-trajectory.xml @ 16:5dde9b3c169e draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 473f6f3175ac65391193d5671abaf1b560e4c593-dirty"
author ebi-gxa
date Tue, 23 Mar 2021 18:13:46 +0000
parents c646bd10dcab
children 2fe4b4cba312
line wrap: on
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--- a/scanpy-plot-trajectory.xml	Wed Nov 25 16:19:54 2020 +0000
+++ b/scanpy-plot-trajectory.xml	Tue Mar 23 18:13:46 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+<tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
   <description>visualise cell trajectories</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -12,6 +12,7 @@
     --use-key '${use_key}'
 #end if
     --layout ${layout}
+    --legend-loc '${legend_loc}'
 #if $basis
     --basis ${basis}
 #end if
@@ -50,6 +51,10 @@
       <option value="fr" selected="true">Fruchterman-Reingold</option>
       <option value="rt">Reingold-Tilford</option>
     </param>
+    <param name="legend_loc" argument="--legend-loc" type="select" label="Location of legend">
+      <option value="right margin" selected="true">Right margin</option>
+      <option value="on data">On data</option>
+    </param>
     <param name="basis" argument="--basis" type="text" optional="true" label="Name of the embedding to plot"
            help="Must be a key of `.obsm` without the prefix 'X_', e.g. 'umap'."/>
     <expand macro="output_plot_params"/>