Mercurial > repos > ebi-gxa > scanpy_read_10x

comparison scanpy-read-10x.xml @ 12:5ff50f4a26cd draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty"
author ebi-gxa
date Mon, 07 Sep 2020 14:02:50 +0000
parents 3ffd959f55f4
children 9afcfcd1d215
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11:d92e6f12b790 12:5ff50f4a26cd
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@"> 2 <tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>into hdf5 object handled by scanpy</description> 3 <description>into hdf5 object handled by scanpy</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
45 <param name="matrix" value="matrix.mtx"/> 45 <param name="matrix" value="matrix.mtx"/>
46 <param name="genes" value="genes.tsv"/> 46 <param name="genes" value="genes.tsv"/>
47 <param name="barcodes" value="barcodes.tsv"/> 47 <param name="barcodes" value="barcodes.tsv"/>
48 <!-- <param name="cell_meta" value=""/> --> 48 <!-- <param name="cell_meta" value=""/> -->
49 <param name="output_format" value="anndata"/> 49 <param name="output_format" value="anndata"/>
50 <output name="output_h5" file="output.h5" ftype="h5" compare="sim_size"/> 50 <output name="output_h5ad" file="read_10x.h5" ftype="h5" compare="sim_size"/>
51 </test> 51 </test>
52 </tests> 52 </tests>
53 53
54 <help><![CDATA[ 54 <help><![CDATA[
55 ================================================================= 55 =================================================================